WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 1341755

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
7217543	GT-AG	5.466419225607043e-05	584	rna-XM_006858954.3 1341755	1	2554551	2555134	Amborella trichopoda 13333	CAG\|GTCTATAATG...CATTTCTTATTC/GCATTTCTTATT...CACAG\|GAA	0	1	16.058
7217544	GT-AG	3.120630305441475e-05	1763	rna-XM_006858954.3 1341755	2	2552596	2554358	Amborella trichopoda 13333	AAG\|GTACTATTGT...TGATTCTCAATT/CTGATTCTCAAT...TACAG\|GCA	0	1	23.844
7217545	GT-AG	1.000000099473604e-05	1355	rna-XM_006858954.3 1341755	3	2551034	2552388	Amborella trichopoda 13333	AAG\|GTAATTTAGA...GGTTTTTGGATT/TTTTGGATTATT...CTCAG\|GAA	0	1	32.238
7217546	GT-AG	0.0045037289053716	1073	rna-XM_006858954.3 1341755	4	2549532	2550604	Amborella trichopoda 13333	GTG\|GTACGTTTCT...TTTTTCTTATTC/TTTTTTCTTATT...TTTAG\|GGA	0	1	49.635
7217547	GT-AG	0.0001831883550851	499	rna-XM_006858954.3 1341755	5	2548805	2549303	Amborella trichopoda 13333	AAG\|GTACATATTT...ATTGTTTTGAAG/ATTGTTTTGAAG...GTTAG\|GTT	0	1	58.881
7217548	GT-AG	1.000000099473604e-05	887	rna-XM_006858954.3 1341755	6	2547719	2548605	Amborella trichopoda 13333	ATG\|GTGCGATTCA...GATTGTTTAGCT/AGATTGTTTAGC...AACAG\|AGG	1	1	66.951
7217549	GT-AG	3.2688126765707885e-05	1074	rna-XM_006858954.3 1341755	7	2546017	2547090	Amborella trichopoda 13333	TTG\|GTAAGTTTCC...TGTTTTTTGAGG/GAGATTCTGATT...GATAG\|TCG	2	1	92.417

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);