introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 13349346

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
71011436 GT-AG 0 3.6300727289824287e-05 44 mRNA_136 13349346 1 10708530 10708573 Entomophaga maimaiga 42810 TCG|GTAATTTAAA...GTTTTCTAAATT/CGTTTTCTAAAT...TCTAG|AAC 0 1 6.321
71011437 GT-AG 0 0.0006108246566702 37 mRNA_136 13349346 2 10708710 10708746 Entomophaga maimaiga 42810 GAG|GTATTTGACC...TAGTTCTTACTC/TTCTTACTCACT...TCCAG|AAA 1 1 12.052
71011438 GT-AG 0 1.000000099473604e-05 36 mRNA_136 13349346 3 10708986 10709021 Entomophaga maimaiga 42810 CCG|GTAATACGAC...TGGTTTTTAAAC/TTTAAACTAATC...TGAAG|TAT 0 1 22.124
71011439 GT-AG 0 8.623799058872604e-05 41 mRNA_136 13349346 4 10709077 10709117 Entomophaga maimaiga 42810 AGA|GTAAGTTGTT...CATGATTTAATC/CATGATTTAATC...TGAAG|AAC 1 1 24.442
71011440 GT-AG 0 1.000000099473604e-05 373 mRNA_136 13349346 5 10709309 10709681 Entomophaga maimaiga 42810 AAA|GTAATTGCAT...AATTTTGTATCT/TTGTATCTAAAA...TTTAG|TCA 0 1 32.491
71011441 GT-AG 0 2.017613773454553e-05 39 mRNA_136 13349346 6 10709805 10709843 Entomophaga maimaiga 42810 GAC|GTAAGATTTG...GTAATTTTGAAT/TTCAGTTTGACT...TCAAG|GAC 0 1 37.674

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);