introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 13349337

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
71011386 GT-AG 0 1.000000099473604e-05 440 mRNA_1750 13349337 1 149865222 149865661 Entomophaga maimaiga 42810 CAG|GTAATGCATT...CATATCATGACT/AATAGATTAATG...TGTAG|ATA 1 1 7.714
71011387 GT-AG 0 0.0041071749117025 37 mRNA_1750 13349337 2 149864831 149864867 Entomophaga maimaiga 42810 ATG|GTATATAATA...AGTTTATTAACT/AGTTTATTAACT...CCTAG|ATT 1 1 22.087
71011388 GT-AG 0 6.80975968045489e-05 37 mRNA_1750 13349337 3 149864317 149864353 Entomophaga maimaiga 42810 ATA|GTAAGCCTCC...GGATCCGTTGCT/CCGTTGCTAATA...TTTAG|ACG 1 1 41.454
71011389 GT-AG 0 3.2438840900164974e-05 37 mRNA_1750 13349337 4 149864151 149864187 Entomophaga maimaiga 42810 CAG|GTACATATCT...CCTGCCTAACTT/TCCTGCCTAACT...AACAG|CAG 1 1 46.691
71011390 GT-AG 0 0.0014076067047806 38 mRNA_1750 13349337 5 149863648 149863685 Entomophaga maimaiga 42810 AGA|GTATGTGTGA...TTTATCTAACTT/ATTTATCTAACT...AATAG|CAA 1 1 65.57
71011391 GT-AG 0 0.0053384505406638 33 mRNA_1750 13349337 6 149863555 149863587 Entomophaga maimaiga 42810 AAG|GTATAATCCA...CTTTCCTTAATA/CTTTCCTTAATA...TGCAG|GGA 1 1 68.006
71011392 GT-AG 0 0.0040354861765656 38 mRNA_1750 13349337 7 149863251 149863288 Entomophaga maimaiga 42810 AAT|GTATGGTTTT...TTGTGCTTATTT/ATTGTGCTTATT...TGCAG|GAG 0 1 78.806
71011393 GT-AG 0 0.0001089062487522 37 mRNA_1750 13349337 8 149862959 149862995 Entomophaga maimaiga 42810 AAG|GTAATTTTTG...GAATGCTTAATT/GAATGCTTAATT...TGTAG|TCC 0 1 89.16

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);