introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 13349330

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
71011329 GT-AG 0 1.000000099473604e-05 215 mRNA_850 13349330 1 68569389 68569603 Entomophaga maimaiga 42810 AAG|GTGACGATTT...GTATACTTATTG/GGTATACTTATT...TATAG|AGT 1 1 41.222
71011330 GT-AG 0 1.000000099473604e-05 47 mRNA_850 13349330 2 68569649 68569695 Entomophaga maimaiga 42810 AAG|GTAAATACAC...CTTTTCATATTC/AATCTTTTCATA...TATAG|GTG 1 1 42.962
71011331 GT-AG 0 0.0102992631078266 51 mRNA_850 13349330 3 68569830 68569880 Entomophaga maimaiga 42810 CTC|GTATGTAGAT...TTTTCCATAACT/AGATTATTTATC...TTTAG|AAA 0 1 48.144
71011332 GT-AG 0 1.0618894425617384e-05 36 mRNA_850 13349330 4 68570016 68570051 Entomophaga maimaiga 42810 TCT|GTAAGATATT...GTTTATTTAATA/TTGTTGTTTATT...TACAG|GGG 0 1 53.364
71011333 GT-AG 0 1.000000099473604e-05 37 mRNA_850 13349330 5 68570133 68570169 Entomophaga maimaiga 42810 CTG|GTAAAGCATC...TGTTTTTTAACT/TGTTTTTTAACT...TATAG|GCG 0 1 56.497
71011334 GT-AG 0 1.000000099473604e-05 39 mRNA_850 13349330 6 68570320 68570358 Entomophaga maimaiga 42810 GAA|GTAAGAGAAA...ACTTTCTTAACT/ACTTTCTTAACT...ATTAG|CTG 0 1 62.297
71011335 GT-AG 0 0.0003997353467244 39 mRNA_850 13349330 7 68570655 68570693 Entomophaga maimaiga 42810 TAG|GTAGATTATG...TATTTTTTAATT/TATTTTTTAATT...TATAG|TTT 2 1 73.743
71011336 GT-AG 0 0.0002939328445604 34 mRNA_850 13349330 8 68570991 68571024 Entomophaga maimaiga 42810 TTG|GTAACTGCCT...CAAGCCTAACCT/TTGCTTTTCAAG...ATTAG|CCA 2 1 85.228
71011337 GT-AG 0 1.000000099473604e-05 39 mRNA_850 13349330 9 68571290 68571328 Entomophaga maimaiga 42810 AAA|GTAATTCCCT...GATTTCTGATAA/AGATTTCTGATA...TTTAG|ATG 0 1 95.476

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);