introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 13349301

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
71011126 GT-AG 0 0.1806364840359348 36 mRNA_1606 13349301 1 136114967 136115002 Entomophaga maimaiga 42810 AAG|GTATTCTTTA...ATTGTCTAATCA/ACAATTTTCATT...CCTAG|ATC 0 1 24.402
71011127 GT-AG 0 1.914269418603508e-05 41 mRNA_1606 13349301 2 136114752 136114792 Entomophaga maimaiga 42810 AAG|GTACTTTAAG...TATCCTATAGAG/TAGAGATTCAAT...TATAG|CAT 0 1 30.179
71011128 GT-AG 0 3.5003934613394384e-05 36 mRNA_1606 13349301 3 136114605 136114640 Entomophaga maimaiga 42810 ACG|GTAAGCATTT...TCAACTCTAACT/TCAACTCTAACT...CTTAG|GAG 0 1 33.865
71011129 GT-AG 0 0.0210041701718279 41 mRNA_1606 13349301 4 136114462 136114502 Entomophaga maimaiga 42810 AAG|GTATACTAGT...ACAGTTTTGAAT/ATAAATTTCACA...ATTAG|GAG 0 1 37.251
71011130 GT-AG 0 1.3056933351826814e-05 39 mRNA_1606 13349301 5 136113471 136113509 Entomophaga maimaiga 42810 CAG|GTAAACATTT...GTATACTGATCA/CGTATACTGATC...CCCAG|CTC 1 1 68.858
71011131 GT-AG 0 1.000000099473604e-05 37 mRNA_1606 13349301 6 136113350 136113386 Entomophaga maimaiga 42810 TAG|GTAATTACAT...CATTTCTCAATT/CCATTTCTCAAT...AACAG|ATG 1 1 71.647
71011132 GT-AG 0 1.000000099473604e-05 46 mRNA_1606 13349301 7 136113244 136113289 Entomophaga maimaiga 42810 AAA|GTAAGATATT...TTCATTTCATCT/ATTCATTTCATC...TTTAG|CTG 1 1 73.639
71011133 GT-AG 0 1.000000099473604e-05 42 mRNA_1606 13349301 8 136113148 136113189 Entomophaga maimaiga 42810 AAG|GTAATTCAAA...CTCCCATTAATT/CTCCCATTAATT...TTTAG|TCA 1 1 75.432

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);