introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 13349280

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
71011002 GT-AG 0 1.000000099473604e-05 72 mRNA_1532 13349280 1 130492596 130492667 Entomophaga maimaiga 42810 GTG|GTGAGTGTTT...CTTATATTGATG/CTTATATTGATG...TTAAG|AGA 1 1 0.553
71011003 GT-AG 0 1.000000099473604e-05 41 mRNA_1532 13349280 2 130492765 130492805 Entomophaga maimaiga 42810 TTG|GTAAGATCTT...TGTCCATTAAAA/TGTCCATTAAAA...TCTAG|CCT 2 1 3.377
71011004 GT-AG 0 0.0046454484275451 54 mRNA_1532 13349280 3 130492839 130492892 Entomophaga maimaiga 42810 AAA|GTAAGTTTTT...TTTTTCTTATTT/ATTTTTCTTATT...AACAG|TTA 2 1 4.338
71011005 GT-AG 0 0.0001023983633704 35 mRNA_1532 13349280 4 130492934 130492968 Entomophaga maimaiga 42810 CAA|GTAAGTTTTT...TATTATTTATTC/CTATTATTTATT...TTAAG|TTT 1 1 5.531
71011006 GT-AG 0 0.0032351190247327 40 mRNA_1532 13349280 5 130493306 130493345 Entomophaga maimaiga 42810 GAG|GTAAACTTTG...TTCTTGTTAATT/TTCTTGTTAATT...CTTAG|TCA 2 1 15.342

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);