introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 13349262

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
71010847 GT-AG 0 0.1455743743729716 47 mRNA_1623 13349262 1 138065644 138065690 Entomophaga maimaiga 42810 AAG|GTACCCCATT...AGTTTTTTATTG/AAGTTTTTTATT...TAAAG|ACT 1 1 0.514
71010848 GT-AG 0 4.883689286581841e-05 65 mRNA_1623 13349262 2 138066048 138066112 Entomophaga maimaiga 42810 ATG|GTAAGTTTTT...TATTTCTTGGTA/CTTTTTATAATT...GATAG|ATG 1 1 7.86
71010849 GT-AG 0 0.0007941058846457 39 mRNA_1623 13349262 3 138066172 138066210 Entomophaga maimaiga 42810 TCT|GTAAGTTTTA...TATCCTATATTT/CCTATATTTAAA...ATTAG|GGC 0 1 9.074
71010850 GT-AG 0 8.851621504892287e-05 44 mRNA_1623 13349262 4 138066239 138066282 Entomophaga maimaiga 42810 ATT|GTAAGTATAT...TTGGTTTTGATC/TTGGTTTTGATC...ATTAG|TGA 1 1 9.65
71010851 GT-AG 0 1.4169754590211362e-05 42 mRNA_1623 13349262 5 138066519 138066560 Entomophaga maimaiga 42810 ATG|GTAACAGCTT...AGTTTTTTGGCT/TTTTGGCTGATA...AATAG|TAT 0 1 14.506
71010852 GT-AG 0 1.000000099473604e-05 37 mRNA_1623 13349262 6 138066715 138066751 Entomophaga maimaiga 42810 AAG|GTAATTAATA...AGATGTTTATTA/AAGATGTTTATT...AATAG|GGG 1 1 17.675
71010853 GT-AG 0 1.000000099473604e-05 39 mRNA_1623 13349262 7 138070615 138070653 Entomophaga maimaiga 42810 GAG|GTGAACCGCT...TATTTTTTAATC/TATTTTTTAATC...ATTAG|AAC 0 1 97.16

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);