introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 13349261

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
71010841 GT-AG 0 1.000000099473604e-05 57 mRNA_1431 13349261 1 122340139 122340195 Entomophaga maimaiga 42810 AAT|GTTAGAATGA...ATTTCTGTAAAG/CATATTTTAAGG...TATAG|CAA 2 1 0.756
71010842 GT-AG 0 1.000000099473604e-05 53 mRNA_1431 13349261 2 122340748 122340800 Entomophaga maimaiga 42810 AAA|GTTATGACAA...CTCTCTTTATAG/GCTCTCTTTATA...CAGAG|CTT 2 1 11.741
71010843 GT-AG 0 0.0001751651884358 66 mRNA_1431 13349261 3 122341223 122341288 Entomophaga maimaiga 42810 ACA|GTAAATTAGC...GGAGACTTAATA/TGTCGTTTAATA...ATCAG|GCA 1 1 20.139
71010844 GT-AG 0 1.000000099473604e-05 33 mRNA_1431 13349261 4 122341708 122341740 Entomophaga maimaiga 42810 AAA|GTAAGTTTAG...GAAACGTCAATT/GGAAACGTCAAT...TCCAG|CAC 0 1 28.478
71010845 GT-AG 0 1.000000099473604e-05 39 mRNA_1431 13349261 5 122341793 122341831 Entomophaga maimaiga 42810 CAG|GTAAATAAAT...TATTTTTTAATG/TATTTTTTAATG...TATAG|GAG 1 1 29.512
71010846 GT-AG 0 5.871994787854312e-05 145 mRNA_1431 13349261 6 122342054 122342198 Entomophaga maimaiga 42810 ACT|GTAAAATCAT...AATTTCTTGAAA/GTTTGACTCAAT...TATAG|GCG 1 1 33.93

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);