WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 13349259

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
71010812	GT-AG	1.000000099473604e-05	38	mRNA_1416 13349259	1	121348036	121348073	Entomophaga maimaiga 42810	GAG\|GTAAAGCTTT...ATTATACTAATG/ATTATACTAATG...TTTAG\|CGT	0	1	57.097
71010813	GT-AG	4.753678686678131e-05	36	mRNA_1416 13349259	2	121348182	121348217	Entomophaga maimaiga 42810	CAG\|GTATTATACC...GGTTATTTATTC/TTTATTCTCACA...TTTAG\|ATG	0	1	59.025
71010814	GT-AG	1.000000099473604e-05	35	mRNA_1416 13349259	3	121348282	121348316	Entomophaga maimaiga 42810	CAG\|GTAATCAATT...TTGAGTTTAATT/TTGAGTTTAATT...TTCAG\|ATG	1	1	60.168
71010815	GT-AG	0.0002690478275848	33	mRNA_1416 13349259	4	121348403	121348435	Entomophaga maimaiga 42810	GAT\|GTAATTTTTA...ACAAGATTAACA/ACAAGATTAACA...GTTAG\|CAA	0	1	61.703
71010816	GT-AG	1.000000099473604e-05	34	mRNA_1416 13349259	5	121348727	121348760	Entomophaga maimaiga 42810	GAG\|GTTGGTCCAA...CTTTTTTTAACC/CTTTTTTTAACC...TGTAG\|CGT	0	1	66.899
71010817	GT-AG	0.0032126733176941	41	mRNA_1416 13349259	6	121350253	121350293	Entomophaga maimaiga 42810	ATG\|GTAACCCCAT...TTCTTGTTAATT/TTCTTGTTAATT...TCTAG\|GCC	1	1	93.537
71010818	GT-AG	0.0204970402097005	37	mRNA_1416 13349259	7	121350427	121350463	Entomophaga maimaiga 42810	CAG\|GTATATTCTT...AATTTCTTACCT/CAATTTCTTACC...TTTAG\|GGT	2	1	95.911

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);