introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 13349257

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
71010803 GT-AG 0 0.0006803885668426 276 mRNA_1846 13349257 1 157693639 157693914 Entomophaga maimaiga 42810 AAG|GTATTGTGCT...AATTTTTTAAAA/AATTTTTTAAAA...GATAG|TCC 0 1 0.991
71010804 GT-AG 0 1.000000099473604e-05 46 mRNA_1846 13349257 2 157693396 157693441 Entomophaga maimaiga 42810 AAG|GTACTATTTT...GGAAGCTGATTC/AGGAAGCTGATT...AATAG|GCT 2 1 4.414
71010805 GT-AG 0 1.2587526617871052e-05 56 mRNA_1846 13349257 3 157693213 157693268 Entomophaga maimaiga 42810 ATC|GTAATTAAGT...GTTTTTTTTTCT/GGGAGGCTAAAT...TTCAG|GAT 0 1 6.621
71010806 GT-AG 0 1.7281486686110743e-05 45 mRNA_1846 13349257 4 157692997 157693041 Entomophaga maimaiga 42810 GAG|GTAATTTTGA...GAGGGCTTAGTT/AATTTGTTGAAT...GTTAG|GCG 0 1 9.593
71010807 GT-AG 0 1.5047372347519705e-05 40 mRNA_1846 13349257 5 157692876 157692915 Entomophaga maimaiga 42810 CAG|GTAACAAAAT...TCTTTTTTATTT/TTCTTTTTTATT...GTTAG|ATC 0 1 11.001
71010808 GT-AG 0 1.000000099473604e-05 38 mRNA_1846 13349257 6 157692720 157692757 Entomophaga maimaiga 42810 AAA|GTAAGGCTAC...GAGATAGTAATT/GAGATAGTAATT...TTTAG|AGG 1 1 13.052
71010809 GT-AG 0 1.3617958228154598e-05 35 mRNA_1846 13349257 7 157692572 157692606 Entomophaga maimaiga 42810 CTG|GTAACATGTT...AGAGTTCCAGCT/TTCCAGCTAATA...GATAG|AAA 0 1 15.016

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);