WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 13

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
37	GT-AG	1.000000099473604e-05	537	rna-XM_027482807.1 13	1	4319949	4320485	Abrus precatorius 3816	CAG\|GTTATGCTTT...CTTGCCTTGCAC/ACATTTGTAACC...GATAG\|GCA	2	1	50.8
38	GT-AG	1.452863356426882e-05	1455	rna-XM_027482807.1 13	2	4318326	4319780	Abrus precatorius 3816	TAG\|GTAAGCCTTA...AATGTCTAATCA/TAATGTCTAATC...TTTAG\|AAC	2	1	58.063
39	GT-AG	1.000000099473604e-05	90	rna-XM_027482807.1 13	3	4318070	4318159	Abrus precatorius 3816	AAA\|GTGAGTGTAG...ACATTCTTACTA/TTCTTACTAATT...TGTAG\|GCT	0	1	65.24
40	GT-AG	0.004745601705285	316	rna-XM_027482807.1 13	4	4317637	4317952	Abrus precatorius 3816	AAG\|GTATACATGT...TAATCTTTATGT/ATAATCTTTATG...TGTAG\|GTT	0	1	70.298
41	GT-AG	1.000000099473604e-05	104	rna-XM_027482807.1 13	5	4317339	4317442	Abrus precatorius 3816	CAG\|GTGACGAAGA...GGATTCTTATAT/TGGATTCTTATA...CTCAG\|GCA	2	1	78.686
42	GT-AG	0.0035287938522452	104	rna-XM_027482807.1 13	6	4317104	4317207	Abrus precatorius 3816	CTG\|GTACTTTTCT...ATATTCTTAAGT/TGGCTTTTCAAT...CTCAG\|GTG	1	1	84.349
43	GT-AG	1.000000099473604e-05	632	rna-XM_027482807.1 13	7	4316399	4317030	Abrus precatorius 3816	CAG\|GTCACACGTC...ATAACTTTAGTT/ACTTTAGTTATG...TATAG\|ATG	2	1	87.505

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);