WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 12947892

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
69095313	GT-AG	1.000000099473604e-05	115	rna-XM_010917122.3 12947892	1	12184383	12184497	Elaeis guineensis 51953	AAG\|GTTAGTTGAC...TTTTTGTTAATT/TTTTTGTTAATT...TGCAG\|TAC	0	1	10.055
69095314	GT-AG	6.103737759305566e-05	105	rna-XM_010917122.3 12947892	2	12184553	12184657	Elaeis guineensis 51953	TGG\|GTAATTCTTA...GAGCTTTTAGCC/GTGATTCTAATA...TGCAG\|AAG	1	1	11.484
69095315	GT-AG	0.0014984601606676	2235	rna-XM_010917122.3 12947892	3	12184837	12187071	Elaeis guineensis 51953	AAG\|GTATTTATCA...CATTTCTTTTTT/AATTTGTTGAAA...CACAG\|GTA	0	1	16.134
69095316	GT-AG	0.0123707128513058	121	rna-XM_010917122.3 12947892	4	12187530	12187650	Elaeis guineensis 51953	CCT\|GTATGTCGTC...CTATGTTTGATT/TGTATACTCACA...TGCAG\|ATC	2	1	28.033
69095317	GT-AG	1.000000099473604e-05	200	rna-XM_010917122.3 12947892	5	12188192	12188391	Elaeis guineensis 51953	AAG\|GTAAGGGTAT...CATTTTGTAACC/ATACTTTTCATG...CACAG\|GTT	0	1	42.089
69095318	GT-AG	3.2327539759717706e-05	115	rna-XM_010917122.3 12947892	6	12188572	12188686	Elaeis guineensis 51953	CTG\|GTATAGCCAC...CACCTCTTCACT/CACCTCTTCACT...TTCAG\|GTG	0	1	46.765
69095319	GT-AG	1.000000099473604e-05	84	rna-XM_010917122.3 12947892	7	12189968	12190051	Elaeis guineensis 51953	CAT\|GTAAGTGCTC...CTACATTTGATG/TTGTGTCTCATG...CACAG\|GTG	0	1	80.047
69095320	GT-AG	3.598451332827304e-05	96	rna-XM_010917122.3 12947892	8	12190468	12190563	Elaeis guineensis 51953	ATC\|GTAAGTGTTG...TCACTCATAATT/TAGTCACTCATA...TGCAG\|ATC	2	1	90.855

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);