WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 12917274

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
68847617	GT-AG	0.0002051531128072	376	rna-XM_035896671.1 12917274	1	2080189	2080564	Egretta garzetta 188379	ATG\|GTAGGCTGGG...AACTACTTAACA/AACTACTTAACA...TCCAG\|GGA	1	1	5.445
68847618	GT-AG	0.0045639206736462	1165	rna-XM_035896671.1 12917274	2	2080975	2082139	Egretta garzetta 188379	CAG\|GTATGCTAAA...TTATTTTTACCC/GTTATTTTTACC...TGCAG\|GAG	0	1	32.669
68847619	GT-AG	1.000000099473604e-05	1288	rna-XM_035896671.1 12917274	3	2082218	2083505	Egretta garzetta 188379	GAG\|GTAGTGGTGT...GAGTCTCTAATG/GAGTCTCTAATG...TTCAG\|ATC	0	1	37.849
68847620	GT-AG	1.6160492036045206e-05	269	rna-XM_035896671.1 12917274	4	2083559	2083827	Egretta garzetta 188379	CAG\|GTAAGCATTC...TGTTCTTTCATA/TGTTCTTTCATA...TGCAG\|GCT	2	1	41.368
68847621	GT-AG	1.000000099473604e-05	606	rna-XM_035896671.1 12917274	5	2083916	2084521	Egretta garzetta 188379	AGT\|GTAAGTGAAT...ACCCCTTTATTT/AACCCCTTTATT...TGTAG\|GCA	0	1	47.211
68847622	GT-AG	1.000000099473604e-05	603	rna-XM_035896671.1 12917274	6	2084594	2085196	Egretta garzetta 188379	CCC\|GTGAGTATCA...TTCTCTTTTTCT/CTGTTTGTCAAT...AACAG\|GAA	0	1	51.992
68847623	GT-AG	5.689158393615044e-05	1697	rna-XM_035896671.1 12917274	7	2085312	2087008	Egretta garzetta 188379	AAG\|GTATGTCTGT...GCAAGCTAAACC/CACACTCTCATG...CCCAG\|TCT	1	1	59.628
68847624	GT-AG	1.000000099473604e-05	1555	rna-XM_035896671.1 12917274	8	2087301	2088855	Egretta garzetta 188379	GAG\|GTACGTGTGG...TAACCTCTATTT/GAACAACTAACC...GCCAG\|AGT	2	1	79.017

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);