introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 12758573

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
67904581 GT-AG 0 0.0001033752063775 316 rna-XM_022907914.1 12758573 1 1602532 1602847 Durio zibethinus 66656 AAA|GTAAGTTTTT...TTATTGTTAGCT/TTAGCTTTTATA...TGTAG|GAC 2 1 7.418
67904582 GT-AG 0 1.000000099473604e-05 103 rna-XM_022907914.1 12758573 2 1598894 1598996 Durio zibethinus 66656 AAT|GTGAGTGTCT...TGTTTTTGGATG/AAATGATTAATA...TGCAG|GAC 0 1 87.85
67904583 GT-AG 0 5.421650072882771e-05 101 rna-XM_022907914.1 12758573 3 1598726 1598826 Durio zibethinus 66656 GTG|GTACGTAGCA...AAAATCTTGAAT/TGAATCCTGAAT...TGAAG|GTT 1 1 89.374
67904584 GT-AG 0 0.0280491584500953 140 rna-XM_022907914.1 12758573 4 1598488 1598627 Durio zibethinus 66656 GCA|GTATGTCTTC...TTTTTCTTTTTG/GAAAAGCTCACC...TCCAG|GCC 0 1 91.604
67904585 GT-AG 0 6.358409567242229e-05 95 rna-XM_022907914.1 12758573 5 1598327 1598421 Durio zibethinus 66656 AAT|GTAAATATCC...CGGTTCTTGTCT/TCTTGTCTAACA...TGCAG|AGG 0 1 93.106
67904586 GT-AG 0 0.0017318710172866 334 rna-XM_022907914.1 12758573 6 1597903 1598236 Durio zibethinus 66656 TAC|GTATGTAACA...GAAATTTTACAT/TGAAATTTTACA...GGCAG|ATC 0 1 95.154
67904587 GT-AG 0 1.000000099473604e-05 164 rna-XM_022907914.1 12758573 7 1597562 1597725 Durio zibethinus 66656 AAG|GTTTGGCTCA...TTGCATTTAACT/TTCTGTTTAATC...CCCAG|GAC 0 1 99.181

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);