WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 12758570

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
67904546	GT-AG	1.000000099473604e-05	310	rna-XM_022903586.1 12758570	1	1273039	1273348	Durio zibethinus 66656	CAG\|GTTCGTGAAT...CTTTCTTCAATG/GCTTTCTTCAAT...TGCAG\|GAA	2	1	28.241
67904547	GT-AG	0.0010258981632836	153	rna-XM_022903586.1 12758570	2	1273491	1273643	Durio zibethinus 66656	TGT\|GTAAGTTTGT...TTGGTCTTGAAG/GAAATGCTAACC...TGCAG\|GGT	0	1	30.419
67904548	GT-AG	0.003144306071983	133	rna-XM_022903586.1 12758570	3	1275963	1276095	Durio zibethinus 66656	CTG\|GTATTATTGC...TAGCCTTTGATG/TTGATGTTTATA...TATAG\|GAT	0	1	65.992
67904549	GT-AG	0.000221412175613	171	rna-XM_022903586.1 12758570	4	1276190	1276360	Durio zibethinus 66656	CCG\|GTATTGGTTT...ATTTTATTAATA/TAATTTTTTATT...TTTAG\|GCA	1	1	67.434
67904550	GT-AG	1.6728873220804865e-05	493	rna-XM_022903586.1 12758570	5	1276723	1277215	Durio zibethinus 66656	GAG\|GTTTGTTCTT...TTGTGTTTATAA/CTTGTGTTTATA...TGTAG\|GCA	0	1	72.987
67904551	GT-AG	0.0008181447613726	100	rna-XM_022903586.1 12758570	6	1277921	1278020	Durio zibethinus 66656	AAG\|GTTTGCCTTC...TTACCCTTATAG/TCTGGTCTTACC...AACAG\|GTA	0	1	83.801
67904552	GT-AG	0.0968225466061004	464	rna-XM_022903586.1 12758570	7	1278096	1278559	Durio zibethinus 66656	AAG\|GTATGCATTT...GGTTTCTTGATG/ATGAAACTTAAT...TGCAG\|ATT	0	1	84.952
67907124	GT-AG	1.000000099473604e-05	144	rna-XM_022903586.1 12758570	8	1279507	1279650	Durio zibethinus 66656	TGG\|GTAAGTTAGA...TGGTTATTACTT/TATTACTTCATC...TCCAG\|GTT		0	99.478

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);