introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 11997984

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
65073916 GT-AG 0 1.000000099473604e-05 4836 rna-XM_026101322.1 11997984 2 3562798 3567633 Dromaius novaehollandiae 8790 AAG|GTAAGACTAT...TAGGTTTTAATG/AATTTATTTACT...TGCAG|AGG 2 1 15.365
65073917 GT-AG 0 0.0001362492827639 2590 rna-XM_026101322.1 11997984 3 3559995 3562584 Dromaius novaehollandiae 8790 ATA|GTAAGTATGC...GTGTTCTTGAAT/TCAAGTTTAATA...TTCAG|TGC 2 1 33.447
65073918 GT-AG 0 1.000000099473604e-05 374 rna-XM_026101322.1 11997984 4 3559476 3559849 Dromaius novaehollandiae 8790 AAG|GTGAAGCAAC...TAGTTTGTAAAT/TAGTTTGTAAAT...TCTAG|CCT 0 1 45.756
65073919 GT-AG 0 2.62131787821682e-05 918 rna-XM_026101322.1 11997984 5 3558431 3559348 Dromaius novaehollandiae 8790 TAG|GTATGGAAGG...AGTATCTTAAAT/TAGTATCTTAAA...TCTAG|CTC 1 1 56.537
65073920 GT-AG 0 1.1771554839914706e-05 1428 rna-XM_026101322.1 11997984 6 3556954 3558381 Dromaius novaehollandiae 8790 GTG|GTAGGTTGTA...AGGACTTTGTTT/ACTTTGTTTAGG...CTCAG|GAA 2 1 60.696
65073921 GT-AG 0 1.000000099473604e-05 2089 rna-XM_026101322.1 11997984 7 3554685 3556773 Dromaius novaehollandiae 8790 AGA|GTAAGTAACA...TGCTTCTGAAAT/CTGAAATTAACT...CACAG|GGA 2 1 75.976
65074174 GT-AG 0 1.000000099473604e-05 4625 rna-XM_026101322.1 11997984 1 3567790 3572414 Dromaius novaehollandiae 8790 CAG|GTAAGGTTTT...ATTTCCAAAACA/CTTGTATATATT...AACAG|GTG   0 5.008

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);