WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11478707

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
63113071	GT-AG	1.000000099473604e-05	62	rna-DGYR_LOCUS294 11478707	1	1205069	1205130	Dimorphilus gyrociliatus 2664684	CTG\|GTTGATAAGC...TAAATTTTGAAT/TAAATTTTGAAT...AATAG\|TCG	0	1	0.981
63113072	GT-AG	3.153443290596221e-05	200	rna-DGYR_LOCUS294 11478707	2	1205277	1205476	Dimorphilus gyrociliatus 2664684	ATG\|GTATGAAATT...TTGATTTTAGAA/AACTCGTTTATC...AACAG\|GCA	2	1	5.323
63113073	GT-AG	1.000000099473604e-05	120	rna-DGYR_LOCUS294 11478707	3	1205712	1205831	Dimorphilus gyrociliatus 2664684	ATG\|GTTAGTTGTT...GTAATCTGAAAT/TTTTGTGTAATC...TTTAG\|CTA	0	1	12.31
63113074	GT-AG	4.583271611215055e-05	103	rna-DGYR_LOCUS294 11478707	4	1205880	1205982	Dimorphilus gyrociliatus 2664684	GCT\|GTAAGTATAG...TATATATTAATA/TATATATTAATA...TCTAG\|AAA	0	1	13.738
63113075	GT-AG	8.542352167495422e-05	72	rna-DGYR_LOCUS294 11478707	5	1206064	1206135	Dimorphilus gyrociliatus 2664684	GAA\|GTACTACTTT...TTTTCTATATTT/GTTGAATTAATT...TAAAG\|GAA	0	1	16.146
63113076	GT-AG	0.0006657866380081	465	rna-DGYR_LOCUS294 11478707	6	1206242	1206706	Dimorphilus gyrociliatus 2664684	GCG\|GTATTATCAA...ACCGTATTAATA/TTGCTTTTCAAA...TCAAG\|TTT	1	1	19.298
63113077	GT-AG	0.0002328693014603	135	rna-DGYR_LOCUS294 11478707	7	1206994	1207128	Dimorphilus gyrociliatus 2664684	AAG\|GTAGACATTT...TGTATTTTATCC/TTGTATTTTATC...TGAAG\|GTG	0	1	27.832
63113078	GT-AG	0.0016375486020304	98	rna-DGYR_LOCUS294 11478707	8	1207948	1208045	Dimorphilus gyrociliatus 2664684	AAA\|GTAATTTCTT...TTCTCTTTAATT/TTGTTATTTATG...TTCAG\|GTG	0	1	52.186

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);