introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11478689

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
63112885 GT-AG 0 0.002064894784773 67 rna-DGYR_LOCUS580 11478689 1 2198474 2198540 Dimorphilus gyrociliatus 2664684 AAG|GTAATCTATA...AACTTCTTAACT/ATTTAGTTGATT...AACAG|TGA 1 1 0.418
63112886 GT-AG 0 1.000000099473604e-05 81 rna-DGYR_LOCUS580 11478689 2 2198675 2198755 Dimorphilus gyrociliatus 2664684 TTG|GTAAGTATAT...GTTTAATTAACT/GTTTAATTAACT...TATAG|TAC 0 1 3.915
63112887 GT-AG 0 0.0003340450741442 381 rna-DGYR_LOCUS580 11478689 3 2199142 2199522 Dimorphilus gyrociliatus 2664684 AGG|GTAAGTTTTG...ATTGCTTTATCT/CTTTATCTTAAA...TTTAG|TGA 2 1 13.991
63112888 GT-AG 0 9.600621138151889e-05 61 rna-DGYR_LOCUS580 11478689 4 2199695 2199755 Dimorphilus gyrociliatus 2664684 AAG|GTAATCATAC...AAATCGTTAATC/AAATCGTTAATC...AAAAG|TTG 0 1 18.481
63112889 GT-AG 0 0.0001285625367084 59 rna-DGYR_LOCUS580 11478689 5 2200098 2200156 Dimorphilus gyrociliatus 2664684 TTG|GTAACAAAAG...TTTTCTTTAAAA/TTTTTCTTTAAA...TTCAG|GGT 0 1 27.408
63112890 GT-AG 0 1.000000099473604e-05 84 rna-DGYR_LOCUS580 11478689 6 2202383 2202466 Dimorphilus gyrociliatus 2664684 ATA|GTAAGTAGTG...TTCGTTCTAACG/TTCGTTCTAACG...CTCAG|ACA 0 1 85.513
63112891 GT-AG 0 0.0317516429356279 66 rna-DGYR_LOCUS580 11478689 7 2202674 2202739 Dimorphilus gyrociliatus 2664684 CAG|GTATTTTTAT...TTGTCTTTAAAA/ATTGTTATAACA...TCTAG|GGA 0 1 90.916
63112892 GT-AG 0 1.000000099473604e-05 6005 rna-DGYR_LOCUS580 11478689 8 2202841 2208845 Dimorphilus gyrociliatus 2664684 AAT|GTAAGTAAAC...GAAATCTAAAGG/AGAAATCTAAAG...GACAG|ACT 2 1 93.553

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);