introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 11478685

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
63112843 GT-AG 0 2.8197308334371955e-05 227 rna-DGYR_LOCUS276 11478685 1 1154224 1154450 Dimorphilus gyrociliatus 2664684 GTA|GTAAGTGCCA...ATATTTTTAATT/ATATTTTTAATT...TTCAG|CTT 0 1 2.973
63112844 GT-AG 0 1.000000099473604e-05 65 rna-DGYR_LOCUS276 11478685 2 1155564 1155628 Dimorphilus gyrociliatus 2664684 AAG|GTAATGGAAG...TTGATATTACAT/TAATGGTTGATA...AACAG|ATT 0 1 31.25
63112845 GT-AG 0 1.000000099473604e-05 61 rna-DGYR_LOCUS276 11478685 3 1155871 1155931 Dimorphilus gyrociliatus 2664684 AAA|GTAAGACTAC...ATATTTTTGAAA/TTCTTTTTCAAA...TTTAG|ATG 2 1 37.398
63112846 GT-AG 0 1.000000099473604e-05 79 rna-DGYR_LOCUS276 11478685 4 1157934 1158012 Dimorphilus gyrociliatus 2664684 CGA|GTTAGTATTC...TGGTGTTTATTA/GTGGTGTTTATT...TGCAG|AAT 0 1 88.262
63112847 GT-AG 0 1.000000099473604e-05 66 rna-DGYR_LOCUS276 11478685 5 1158234 1158299 Dimorphilus gyrociliatus 2664684 ATT|GTAGGACAGT...TCATTTTTAATC/TTTTTAATCATT...TTCAG|GTG 2 1 93.877
63112848 GT-AG 0 3.6958737141091535e-05 56 rna-DGYR_LOCUS276 11478685 6 1158406 1158461 Dimorphilus gyrociliatus 2664684 TCA|GTAAAGTTAA...TCGCTTTTACTA/CTTTTACTAACA...TTTAG|AAT 0 1 96.57

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);