WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11478657

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
63112507	GT-AG	0.1035124501308104	67	rna-DGYR_LOCUS826 11478657	1	3388012	3388078	Dimorphilus gyrociliatus 2664684	AGA\|GTATACAGTT...CTTTGTTTGATA/CTTTGTTTGATA...TTCAG\|TTT	1	1	0.895
63112508	GT-AG	1.000000099473604e-05	73	rna-DGYR_LOCUS826 11478657	2	3388208	3388280	Dimorphilus gyrociliatus 2664684	ACG\|GTTAGTTTAT...GCGTTTGTATTT/GTATTTCCCACT...AATAG\|ATT	1	1	3.405
63112509	GT-AG	1.000000099473604e-05	62	rna-DGYR_LOCUS826 11478657	3	3388389	3388450	Dimorphilus gyrociliatus 2664684	TAG\|GTTAGATCTA...TATGTCTAAATA/ATTTAATTAATT...TATAG\|CTT	1	1	5.507
63112510	GT-AG	1.000000099473604e-05	58	rna-DGYR_LOCUS826 11478657	4	3389114	3389171	Dimorphilus gyrociliatus 2664684	TAG\|GTGAGTTATA...TTCCATTTAACT/ATTTAACTAATG...AAAAG\|CTT	1	1	18.408
63112511	GT-AG	1.2081450511905875e-05	59	rna-DGYR_LOCUS826 11478657	5	3389805	3389863	Dimorphilus gyrociliatus 2664684	ATG\|GTTTGTTAAA...GTATATTTATAT/CGTATATTTATA...CTTAG\|ATT	1	1	30.726
63112512	GT-AG	1.5554848963672308e-05	69	rna-DGYR_LOCUS826 11478657	6	3390008	3390076	Dimorphilus gyrociliatus 2664684	AAA\|GTAATGATTT...TCCTTCTTATTT/TATTTTTTCACC...AATAG\|GCT	1	1	33.528
63112513	GT-AG	1.000000099473604e-05	66	rna-DGYR_LOCUS826 11478657	7	3392186	3392251	Dimorphilus gyrociliatus 2664684	AAG\|GTTTGAATTA...TGAATTTTATTT/AAATTTCTGACT...AATAG\|AAT	1	1	74.567
63112514	GT-AG	1.000000099473604e-05	56	rna-DGYR_LOCUS826 11478657	8	3393197	3393252	Dimorphilus gyrociliatus 2664684	CAA\|GTAAGTAAAT...TATTTATTAAAT/TATGTATTTATT...TTTAG\|AAA	1	1	92.956

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);