WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11364025

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
62712132	GT-AG	1.000000099473604e-05	1347	rna-GPM918_LOCUS111 11364025	1	29969	31315	Didymodactylos carnosus 1234261	AAA\|GTAAGAGACC...TCTATTTTGACT/TCTATTTTGACT...TTTAG\|TTA	2	1	1.857
62712133	GT-AG	0.0001671550870563	3231	rna-GPM918_LOCUS111 11364025	2	31504	34734	Didymodactylos carnosus 1234261	AAG\|GTAATTTTTT...TTCTTTTTACTT/TTTCTTTTTACT...TTTAG\|TCA	1	1	11.046
62712134	GT-AG	0.0027866899594677	77	rna-GPM918_LOCUS111 11364025	3	34836	34912	Didymodactylos carnosus 1234261	GAG\|GTATAATTAA...TTCTCTTTATTA/TTTCTCTTTATT...TTAAG\|GCA	0	1	15.982
62712135	GT-AG	0.0007839906386824	678	rna-GPM918_LOCUS111 11364025	4	35003	35680	Didymodactylos carnosus 1234261	CAA\|GTACGTATGG...ATATTTTTGATC/ATATTTTTGATC...TTTAG\|TCA	0	1	20.381
62712136	GT-AG	1.000000099473604e-05	767	rna-GPM918_LOCUS111 11364025	5	35820	36586	Didymodactylos carnosus 1234261	CAG\|GTAGAATAGC...ATAGTTTTAGTA/GTTTGTCTAATA...TTTAG\|AAC	1	1	27.175
62712137	GT-AG	0.0019068016533531	54	rna-GPM918_LOCUS111 11364025	6	36661	36714	Didymodactylos carnosus 1234261	GTG\|GTATGTAGTT...TATCCATTAATA/TATCCATTAATA...TTTAG\|ACA	0	1	30.792
62712138	GT-AG	0.0010004919610924	61	rna-GPM918_LOCUS111 11364025	7	37016	37076	Didymodactylos carnosus 1234261	AAT\|GTACGTATTT...TATATTTTACTT/ACTTTTTTCAAT...TTTAG\|TAC	1	1	45.503
62712139	GT-AG	1.000000099473604e-05	71	rna-GPM918_LOCUS111 11364025	8	37219	37289	Didymodactylos carnosus 1234261	GAC\|GTAAGAGTTT...CTATTTTTAACA/CTATTTTTAACA...TGTAG\|AGA	2	1	52.444

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);