WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11363951

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
62711304	GT-AG	2.69189481559564e-05	69	rna-GPM918_LOCUS15 11363951	1	9069	9137	Didymodactylos carnosus 1234261	AAG\|GTAATTTTGC...GTTCCATTGACA/GGAATTTTTAAT...TTTAG\|GAG	1	1	2.756
62711305	GT-AG	0.0006744924225584	855	rna-GPM918_LOCUS15 11363951	2	8108	8962	Didymodactylos carnosus 1234261	CAG\|GTTTGTTTTT...TTATCCTTTATG/AATAATTTTATC...TTTAG\|AAA	2	1	12.178
62711306	GT-AG	2.163274923099996e-05	56	rna-GPM918_LOCUS15 11363951	3	7974	8029	Didymodactylos carnosus 1234261	CAG\|GTTTGTCATT...TCCTTTTTGATT/TTTGATTTGATT...TACAG\|AAT	2	1	19.111
62711307	GT-AG	3.687781073793418e-05	66	rna-GPM918_LOCUS15 11363951	4	7803	7868	Didymodactylos carnosus 1234261	TGA\|GTAAGTATTC...AAATATTTGATC/ATGTTGCTCATT...TTCAG\|TGA	2	1	28.444
62711308	GT-AG	5.021837380942181e-05	55	rna-GPM918_LOCUS15 11363951	5	7610	7664	Didymodactylos carnosus 1234261	TAG\|GTAAATTCAA...ATCTTTTTAATT/ATCTTTTTAATT...TTTAG\|ACG	2	1	40.711
62711309	GT-AG	0.0047760833802933	184	rna-GPM918_LOCUS15 11363951	6	7372	7555	Didymodactylos carnosus 1234261	TAG\|GTATTTTAAG...GATATTTTATTC/AGATATTTTATT...TCTAG\|TCG	2	1	45.511
62711310	GT-AG	0.0219561356020261	51	rna-GPM918_LOCUS15 11363951	7	7273	7323	Didymodactylos carnosus 1234261	GAA\|GTATGTTTGA...TATACATTGAAT/TATACATTGAAT...TTTAG\|AAC	2	1	49.778
62711311	GT-AG	1.000000099473604e-05	65	rna-GPM918_LOCUS15 11363951	8	7118	7182	Didymodactylos carnosus 1234261	TCG\|GTTAGTGTGA...AATTTTTTACAT/TCAATTCTAATT...TTCAG\|AAG	2	1	57.778

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);