introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
4 rows where transcript_id = 11132836
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Suggested facets: phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608788 | GT-AG | 0 | 0.0001484814868809 | 83 | rna-XM_027341680.1 11132836 | 1 | 748992 | 749074 | Dermatophagoides pteronyssinus 6956 | CAG|GTTTGTTTTT...ATTGTATTGATT/ATTGTATTGATT...AATAG|AAT | 0 | 1 | 25.195 |
61608789 | GT-AG | 0 | 1.4721212251417614e-05 | 1772 | rna-XM_027341680.1 11132836 | 2 | 746748 | 748519 | Dermatophagoides pteronyssinus 6956 | CGG|GTAAGTCTTT...CTCGTCTTATTT/TTATTTTTCACA...TATAG|ATA | 1 | 1 | 42.735 |
61608790 | GT-AG | 0 | 4.784950849168545e-05 | 686 | rna-XM_027341680.1 11132836 | 3 | 745424 | 746109 | Dermatophagoides pteronyssinus 6956 | TTG|GTAAGCTATT...TTTTTTTCAAAT/TTTTTTTTCAAA...ATTAG|GCT | 0 | 1 | 66.444 |
61608791 | GT-AG | 0 | 0.0006253779878085 | 92 | rna-XM_027341680.1 11132836 | 4 | 745206 | 745297 | Dermatophagoides pteronyssinus 6956 | AAT|GTAAGTTTAA...TTTTTTTTAAAT/TTAAATTTCATT...AAAAG|GTA | 0 | 1 | 71.126 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);