introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 11132828
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608759 | GT-AG | 0 | 1.6026739961321755e-05 | 120 | rna-XM_027349438.1 11132828 | 1 | 1980364 | 1980483 | Dermatophagoides pteronyssinus 6956 | AAC|GTAAGCAAAC...TCGTTTTTACAT/TTTTTTCTCATA...TTTAG|CTT | 1 | 1 | 0.765 |
61608760 | GT-AG | 0 | 0.0017613200581092 | 60 | rna-XM_027349438.1 11132828 | 2 | 1979145 | 1979204 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAGCTTTC...TTTGCTTTGAAT/AATTTTTTCAAA...CTCAG|ATA | 2 | 1 | 41.093 |
61608761 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-XM_027349438.1 11132828 | 3 | 1978303 | 1978358 | Dermatophagoides pteronyssinus 6956 | GAG|GTAAATGAAC...TTTGTTTTATAA/ATCTTGTTCATA...AATAG|ACC | 2 | 1 | 68.441 |
61608762 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-XM_027349438.1 11132828 | 4 | 1977659 | 1977721 | Dermatophagoides pteronyssinus 6956 | CGG|GTTAGTTGTC...TATATATTGATA/TATATATTGATA...TTTAG|ATG | 1 | 1 | 88.657 |
61608763 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027349438.1 11132828 | 5 | 1977454 | 1977513 | Dermatophagoides pteronyssinus 6956 | AAG|GTTGGTAGTA...AATTTTTTATTC/TAATTTTTTATT...TGAAG|ATT | 2 | 1 | 93.702 |
61608764 | GT-AG | 0 | 0.0121387631921316 | 62 | rna-XM_027349438.1 11132828 | 6 | 1977326 | 1977387 | Dermatophagoides pteronyssinus 6956 | CAC|GTATGTATTC...TTATCTTTTATC/TTATCTTTTATC...TGTAG|TGG | 2 | 1 | 95.999 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);