introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 11132827
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Suggested facets: length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608751 | GT-AG | 0 | 2.7526188711338853e-05 | 65 | rna-XM_027350298.1 11132827 | 2 | 2448399 | 2448463 | Dermatophagoides pteronyssinus 6956 | GAG|GTAAGTTTTT...TTTGGTTTAATT/TTAATTTTCATC...TATAG|ATG | 1 | 1 | 8.78 |
61608752 | GT-AG | 0 | 1.000000099473604e-05 | 769 | rna-XM_027350298.1 11132827 | 3 | 2447401 | 2448169 | Dermatophagoides pteronyssinus 6956 | CAA|GTGAGTAAAG...TATTTTTTAAAA/ATTTTATTTATC...ATCAG|TAT | 2 | 1 | 16.31 |
61608753 | GT-AG | 0 | 0.0001356812036009 | 97 | rna-XM_027350298.1 11132827 | 4 | 2446925 | 2447021 | Dermatophagoides pteronyssinus 6956 | AAA|GTAAATATAA...TTTTTCTTATTG/ATTTTTCTTATT...ATTAG|GCT | 0 | 1 | 28.773 |
61608754 | GT-AG | 0 | 0.0161577129360283 | 65 | rna-XM_027350298.1 11132827 | 5 | 2446579 | 2446643 | Dermatophagoides pteronyssinus 6956 | CAG|GTATATTTGT...TTTTCTCTGATT/ATTTTTTTCATC...TGAAG|TTA | 2 | 1 | 38.014 |
61608755 | GT-AG | 0 | 0.0001168742594301 | 67 | rna-XM_027350298.1 11132827 | 6 | 2446006 | 2446072 | Dermatophagoides pteronyssinus 6956 | TGA|GTAAGTTTAG...CTTTTTTTCATC/CTTTTTTTCATC...TGCAG|AAG | 1 | 1 | 54.653 |
61608756 | GT-AG | 0 | 0.0003060209509887 | 61 | rna-XM_027350298.1 11132827 | 7 | 2445922 | 2445982 | Dermatophagoides pteronyssinus 6956 | AAG|GTAATTTTCC...ATTTTTTTAGTT/TGGTTTTTTATT...CTCAG|AGT | 0 | 1 | 55.409 |
61608757 | GT-AG | 0 | 2.3266079569244484e-05 | 55 | rna-XM_027350298.1 11132827 | 8 | 2445570 | 2445624 | Dermatophagoides pteronyssinus 6956 | ATG|GTATGAATGC...TTAATTTGAACA/TAAGATTTTACA...TTTAG|CTC | 0 | 1 | 65.176 |
61608758 | GT-AG | 0 | 0.1154687507396736 | 64 | rna-XM_027350298.1 11132827 | 9 | 2445237 | 2445300 | Dermatophagoides pteronyssinus 6956 | AGC|GTATGTATTT...TTTATTTTATTT/TTTTATTTTATC...TAAAG|TGA | 2 | 1 | 74.022 |
61609925 | GT-AG | 0 | 9.175848229766484e-05 | 536 | rna-XM_027350298.1 11132827 | 1 | 2448634 | 2449169 | Dermatophagoides pteronyssinus 6956 | TGT|GTACGTACAT...GACCCTATGATT/CATGATATTATC...TTTAG|GTT | 0 | 4.9 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);