home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 11132824

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608736 GT-AG 0 1.000000099473604e-05 21279 rna-XM_027342094.1 11132824 1 2844647 2865925 Dermatophagoides pteronyssinus 6956 CAT|GTGAGTAGAA...GGTTCTTTTTCC/TTTAAACTAAAT...TAAAG|GCT 0 1 3.931
61608737 GT-AG 0 1.4339530254401253e-05 34862 rna-XM_027342094.1 11132824 2 2809331 2844192 Dermatophagoides pteronyssinus 6956 ACG|GTAGGTGCTA...TTTTTTTTGATT/TTTTTTTTGATT...TTTAG|CTC 1 1 19.187
61608738 GT-AG 0 1.000000099473604e-05 25537 rna-XM_027342094.1 11132824 3 2783347 2808883 Dermatophagoides pteronyssinus 6956 AAG|GTAGGTGTCC...CTTTCTTTATTC/TCTTTATTCATC...TTCAG|CCT 1 1 34.207
61608739 GT-AG 0 0.00034874041346 507 rna-XM_027342094.1 11132824 4 2782707 2783213 Dermatophagoides pteronyssinus 6956 CAG|GTATGTACAT...ATTTTCTTATTC/TATTTTCTTATT...GACAG|GCC 2 1 38.676
61608740 GT-AG 0 1.000000099473604e-05 4631 rna-XM_027342094.1 11132824 5 2777967 2782597 Dermatophagoides pteronyssinus 6956 CAG|GTAAGTTGAA...CTTTTTTTAATC/CTTTTTTTAATC...AATAG|CAA 0 1 42.339
61608741 GT-AG 0 0.0014485192372847 55 rna-XM_027342094.1 11132824 6 2776526 2776580 Dermatophagoides pteronyssinus 6956 GAG|GTATGATTAT...TTATTCTTATTT/ATTATTCTTATT...ATTAG|GTC 0 1 88.911

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.882ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)