introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 11132820
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608720 | GT-AG | 0 | 1.000000099473604e-05 | 1886 | rna-XM_027349653.1 11132820 | 1 | 1693060 | 1694945 | Dermatophagoides pteronyssinus 6956 | ATG|GTAAGTACAT...TTTTTCTTATTT/TTTTTTCTTATT...TTTAG|GTC | 1 | 1 | 19.614 |
61608721 | GT-AG | 0 | 1.000000099473604e-05 | 2830 | rna-XM_027349653.1 11132820 | 2 | 1695252 | 1698081 | Dermatophagoides pteronyssinus 6956 | CTG|GTAAGTCAAT...TAATCCTCACTA/ATAATCCTCACT...TTTAG|CCG | 1 | 1 | 29.804 |
61608722 | GT-AG | 0 | 1.000000099473604e-05 | 95 | rna-XM_027349653.1 11132820 | 3 | 1698258 | 1698352 | Dermatophagoides pteronyssinus 6956 | AAG|GTGAGTAAAC...TTTTTTGTAACT/TTTTTTGTAACT...AATAG|GTA | 0 | 1 | 35.664 |
61608723 | GT-AG | 0 | 1.999522558766056e-05 | 81 | rna-XM_027349653.1 11132820 | 4 | 1698489 | 1698569 | Dermatophagoides pteronyssinus 6956 | CAC|GTAAGTCTTT...TTATTTTTGGCA/TTTATGTTTACT...TTTAG|TAT | 1 | 1 | 40.193 |
61608724 | GT-AG | 0 | 0.1025054711336536 | 1167 | rna-XM_027349653.1 11132820 | 5 | 1699123 | 1700289 | Dermatophagoides pteronyssinus 6956 | CAG|GTATGTTTTG...TTATTCTTGATT/TTTTCTTTTATT...TTTAG|AAC | 2 | 1 | 58.608 |
61608725 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-XM_027349653.1 11132820 | 6 | 1700439 | 1700503 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAGTGTGA...TTTTTTTTATTG/GTTTTTTTTATT...CTTAG|ATG | 1 | 1 | 63.57 |
61608726 | GT-AG | 0 | 6.927522417474755e-05 | 1421 | rna-XM_027349653.1 11132820 | 7 | 1700738 | 1702158 | Dermatophagoides pteronyssinus 6956 | AAG|GTAGGTTGTT...TTTATTTTATTT/TTTTATTTTATT...AACAG|AAA | 1 | 1 | 71.362 |
61608727 | GT-AG | 0 | 0.0005408214618484 | 3964 | rna-XM_027349653.1 11132820 | 8 | 1702531 | 1706494 | Dermatophagoides pteronyssinus 6956 | AAC|GTAAGTTTTT...TTGTTGTTGATT/TTGTTGTTGATT...TATAG|AGA | 1 | 1 | 83.75 |
61608728 | GT-AG | 0 | 1.000000099473604e-05 | 1018 | rna-XM_027349653.1 11132820 | 9 | 1706723 | 1707740 | Dermatophagoides pteronyssinus 6956 | AAT|GTAAGTGAAA...TCTTTTTTGATA/TTTTTTCTCATT...TGTAG|GCA | 1 | 1 | 91.342 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);