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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 11132816

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608703 GT-AG 0 0.0002452265109746 89 rna-XM_027348701.1 11132816 1 2696099 2696187 Dermatophagoides pteronyssinus 6956 GAT|GTAAGTGTTT...ATGTTCTTAATA/TTAATATTGATC...TATAG|ATG 0 1 4.386
61608704 GT-AG 0 0.000307652190728 58 rna-XM_027348701.1 11132816 2 2695923 2695980 Dermatophagoides pteronyssinus 6956 ACA|GTAAGTTATT...TGCACTTTATTT/TTTATATTCACC...GTTAG|AGG 1 1 8.22
61608705 GT-AG 0 1.000000099473604e-05 59 rna-XM_027348701.1 11132816 3 2694408 2694466 Dermatophagoides pteronyssinus 6956 TTG|GTAAGAAATT...TTTTCTTTCATA/TTTTCTTTCATA...CTCAG|TAA 2 1 55.523
61608706 GT-AG 0 0.0018026459581718 61 rna-XM_027348701.1 11132816 4 2693740 2693800 Dermatophagoides pteronyssinus 6956 GTC|GTAAGTTTAA...TTATTTTTGACT/TTATTTTTGACT...GATAG|GCA 0 1 75.244
61608707 GT-AG 0 1.000000099473604e-05 51 rna-XM_027348701.1 11132816 5 2693511 2693561 Dermatophagoides pteronyssinus 6956 AAG|GTGAGTCGAT...TATTTTTTAATT/TATTTTTTAATT...TGTAG|CTT 1 1 81.027
61608708 GT-AG 0 1.000000099473604e-05 67 rna-XM_027348701.1 11132816 6 2693013 2693079 Dermatophagoides pteronyssinus 6956 TGG|GTTCGTAGTT...TATTCTTTATTA/TTGATATTTATT...TACAG|GTA 0 1 95.029

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.966ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)