introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 11132816
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608703 | GT-AG | 0 | 0.0002452265109746 | 89 | rna-XM_027348701.1 11132816 | 1 | 2696099 | 2696187 | Dermatophagoides pteronyssinus 6956 | GAT|GTAAGTGTTT...ATGTTCTTAATA/TTAATATTGATC...TATAG|ATG | 0 | 1 | 4.386 |
61608704 | GT-AG | 0 | 0.000307652190728 | 58 | rna-XM_027348701.1 11132816 | 2 | 2695923 | 2695980 | Dermatophagoides pteronyssinus 6956 | ACA|GTAAGTTATT...TGCACTTTATTT/TTTATATTCACC...GTTAG|AGG | 1 | 1 | 8.22 |
61608705 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027348701.1 11132816 | 3 | 2694408 | 2694466 | Dermatophagoides pteronyssinus 6956 | TTG|GTAAGAAATT...TTTTCTTTCATA/TTTTCTTTCATA...CTCAG|TAA | 2 | 1 | 55.523 |
61608706 | GT-AG | 0 | 0.0018026459581718 | 61 | rna-XM_027348701.1 11132816 | 4 | 2693740 | 2693800 | Dermatophagoides pteronyssinus 6956 | GTC|GTAAGTTTAA...TTATTTTTGACT/TTATTTTTGACT...GATAG|GCA | 0 | 1 | 75.244 |
61608707 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-XM_027348701.1 11132816 | 5 | 2693511 | 2693561 | Dermatophagoides pteronyssinus 6956 | AAG|GTGAGTCGAT...TATTTTTTAATT/TATTTTTTAATT...TGTAG|CTT | 1 | 1 | 81.027 |
61608708 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-XM_027348701.1 11132816 | 6 | 2693013 | 2693079 | Dermatophagoides pteronyssinus 6956 | TGG|GTTCGTAGTT...TATTCTTTATTA/TTGATATTTATT...TACAG|GTA | 0 | 1 | 95.029 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);