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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11132815

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608696 GT-AG 0 1.000000099473604e-05 92 rna-XM_027340380.1 11132815 2 1106378 1106469 Dermatophagoides pteronyssinus 6956 TTG|GTTAGTTTTT...ATTATTTTATTC/ATTTTATTCATT...AAAAG|GAT 1 1 25.03
61608697 GT-AG 0 6.146536002281384e-05 1078 rna-XM_027340380.1 11132815 3 1104564 1105641 Dermatophagoides pteronyssinus 6956 AAG|GTAAGCATTG...TTATTTTTATTT/TTTATTTTTATT...CATAG|AAT 2 1 47.388
61608698 GT-AG 0 0.0002006074294407 71 rna-XM_027340380.1 11132815 4 1104222 1104292 Dermatophagoides pteronyssinus 6956 CAT|GTAAGTCTTA...GAAATCTTATTT/TGAAATCTTATT...ATTAG|ATT 0 1 55.62
61608699 GT-AG 0 1.000000099473604e-05 67 rna-XM_027340380.1 11132815 5 1103975 1104041 Dermatophagoides pteronyssinus 6956 TTG|GTAATAATAA...TTTTTTTTACTT/TTTTTTTTTACT...ATAAG|ATT 0 1 61.087
61608700 GT-AG 0 1.000000099473604e-05 79 rna-XM_027340380.1 11132815 6 1103819 1103897 Dermatophagoides pteronyssinus 6956 AAG|GTATGAAATG...GTTTTTTTGTTG/AATTTGCTAATT...AATAG|TGA 2 1 63.426
61608701 GT-AG 0 0.0353009827623649 59 rna-XM_027340380.1 11132815 7 1103647 1103705 Dermatophagoides pteronyssinus 6956 CTG|GTATGTTCAT...TTTTTCTTATCT/TTTTTTCTTATC...AACAG|CAT 1 1 66.859
61608702 GT-AG 0 0.0001287325451757 56 rna-XM_027340380.1 11132815 8 1103285 1103340 Dermatophagoides pteronyssinus 6956 CAG|GTATAAATCT...TCCTTTTTAAAT/AATATTATCATT...TTCAG|GAT 1 1 76.154
61609924 GT-AG 0 0.0011510004111937 818 rna-XM_027340380.1 11132815 1 1107130 1107947 Dermatophagoides pteronyssinus 6956 AAG|GTATGTCTTA...CGATTCATAATT/TCATAATTAATA...CTTAG|TCT   0 5.772

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.202ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)