introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132815
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Suggested facets: score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608696 | GT-AG | 0 | 1.000000099473604e-05 | 92 | rna-XM_027340380.1 11132815 | 2 | 1106378 | 1106469 | Dermatophagoides pteronyssinus 6956 | TTG|GTTAGTTTTT...ATTATTTTATTC/ATTTTATTCATT...AAAAG|GAT | 1 | 1 | 25.03 |
61608697 | GT-AG | 0 | 6.146536002281384e-05 | 1078 | rna-XM_027340380.1 11132815 | 3 | 1104564 | 1105641 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAGCATTG...TTATTTTTATTT/TTTATTTTTATT...CATAG|AAT | 2 | 1 | 47.388 |
61608698 | GT-AG | 0 | 0.0002006074294407 | 71 | rna-XM_027340380.1 11132815 | 4 | 1104222 | 1104292 | Dermatophagoides pteronyssinus 6956 | CAT|GTAAGTCTTA...GAAATCTTATTT/TGAAATCTTATT...ATTAG|ATT | 0 | 1 | 55.62 |
61608699 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-XM_027340380.1 11132815 | 5 | 1103975 | 1104041 | Dermatophagoides pteronyssinus 6956 | TTG|GTAATAATAA...TTTTTTTTACTT/TTTTTTTTTACT...ATAAG|ATT | 0 | 1 | 61.087 |
61608700 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-XM_027340380.1 11132815 | 6 | 1103819 | 1103897 | Dermatophagoides pteronyssinus 6956 | AAG|GTATGAAATG...GTTTTTTTGTTG/AATTTGCTAATT...AATAG|TGA | 2 | 1 | 63.426 |
61608701 | GT-AG | 0 | 0.0353009827623649 | 59 | rna-XM_027340380.1 11132815 | 7 | 1103647 | 1103705 | Dermatophagoides pteronyssinus 6956 | CTG|GTATGTTCAT...TTTTTCTTATCT/TTTTTTCTTATC...AACAG|CAT | 1 | 1 | 66.859 |
61608702 | GT-AG | 0 | 0.0001287325451757 | 56 | rna-XM_027340380.1 11132815 | 8 | 1103285 | 1103340 | Dermatophagoides pteronyssinus 6956 | CAG|GTATAAATCT...TCCTTTTTAAAT/AATATTATCATT...TTCAG|GAT | 1 | 1 | 76.154 |
61609924 | GT-AG | 0 | 0.0011510004111937 | 818 | rna-XM_027340380.1 11132815 | 1 | 1107130 | 1107947 | Dermatophagoides pteronyssinus 6956 | AAG|GTATGTCTTA...CGATTCATAATT/TCATAATTAATA...CTTAG|TCT | 0 | 5.772 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);