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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 11132803

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608651 GT-AG 0 1.000000099473604e-05 1779 rna-XM_027350186.1 11132803 1 2369393 2371171 Dermatophagoides pteronyssinus 6956 GTT|GTGAGTCATT...GTTATATTGATA/GTTATATTGATA...GCTAG|TGC 0 1 6.826
61608652 GT-AG 0 5.818162598389764e-05 721 rna-XM_027350186.1 11132803 2 2371230 2371950 Dermatophagoides pteronyssinus 6956 TGG|GTAAGTTTAT...CTTTCATTGATG/TTCTCTTTCATT...AATAG|AAC 1 1 8.476
61608653 GT-AG 0 0.0001498593497076 89 rna-XM_027350186.1 11132803 3 2372194 2372282 Dermatophagoides pteronyssinus 6956 TAA|GTAAGTTGTT...TCAATTTTATCT/ATCAATTTTATC...ATTAG|ACG 1 1 15.387
61608654 GT-AG 0 1.1340178105802887e-05 76 rna-XM_027350186.1 11132803 4 2373282 2373357 Dermatophagoides pteronyssinus 6956 AAG|GTTTGTTCGA...TGATTTTTCATG/TGATTTTTCATG...TTTAG|TGC 1 1 43.8
61608655 GT-AG 0 1.000000099473604e-05 55 rna-XM_027350186.1 11132803 5 2373777 2373831 Dermatophagoides pteronyssinus 6956 AAT|GTAAGACACT...CACTTCCTATTT/AATTTTCTGATA...TAAAG|CTA 0 1 55.717
61608656 GT-AG 0 1.000000099473604e-05 65 rna-XM_027350186.1 11132803 6 2373968 2374032 Dermatophagoides pteronyssinus 6956 ATG|GTAAATAATA...ATCATTTTGATT/ATCATTTTGATT...TATAG|AGG 1 1 59.585
61608657 GT-AG 0 2.936834166821344e-05 61 rna-XM_027350186.1 11132803 7 2374201 2374261 Dermatophagoides pteronyssinus 6956 CTG|GTAGGATTTT...TTGTCCTAAATT/CTTGTCCTAAAT...ATCAG|GCA 1 1 64.363
61608658 GT-AG 0 1.000000099473604e-05 64 rna-XM_027350186.1 11132803 8 2374361 2374424 Dermatophagoides pteronyssinus 6956 CTG|GTAAGTTAAA...AACTCTATAATT/ATAATTATCATT...TTCAG|GTA 1 1 67.179
61608659 GT-AG 0 0.0884781960561569 63 rna-XM_027350186.1 11132803 9 2374732 2374794 Dermatophagoides pteronyssinus 6956 TCA|GTATGTATTC...TACTTTTTGAAT/AATATTTTCATT...TACAG|ACG 2 1 75.91
61608660 GT-AG 0 1.000000099473604e-05 55 rna-XM_027350186.1 11132803 10 2375027 2375081 Dermatophagoides pteronyssinus 6956 AAG|GTAAAACTTT...ATTTTTTCAAAT/AATTTTTTCAAA...GATAG|CGT 0 1 82.509
61608661 GT-AG 0 1.000000099473604e-05 60 rna-XM_027350186.1 11132803 11 2375269 2375328 Dermatophagoides pteronyssinus 6956 AAA|GTGAGTTTCT...TTATTGTTATCT/TCTTTTCTCAGA...AACAG|GTC 1 1 87.827
61608662 GT-AG 0 0.0098448094494532 68 rna-XM_027350186.1 11132803 12 2375473 2375540 Dermatophagoides pteronyssinus 6956 CCG|GTATGTATCC...AATTTCTTAAAA/AAATGATTCATC...AATAG|GTG 1 1 91.923

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.485ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)