introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 11132803
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608651 | GT-AG | 0 | 1.000000099473604e-05 | 1779 | rna-XM_027350186.1 11132803 | 1 | 2369393 | 2371171 | Dermatophagoides pteronyssinus 6956 | GTT|GTGAGTCATT...GTTATATTGATA/GTTATATTGATA...GCTAG|TGC | 0 | 1 | 6.826 |
61608652 | GT-AG | 0 | 5.818162598389764e-05 | 721 | rna-XM_027350186.1 11132803 | 2 | 2371230 | 2371950 | Dermatophagoides pteronyssinus 6956 | TGG|GTAAGTTTAT...CTTTCATTGATG/TTCTCTTTCATT...AATAG|AAC | 1 | 1 | 8.476 |
61608653 | GT-AG | 0 | 0.0001498593497076 | 89 | rna-XM_027350186.1 11132803 | 3 | 2372194 | 2372282 | Dermatophagoides pteronyssinus 6956 | TAA|GTAAGTTGTT...TCAATTTTATCT/ATCAATTTTATC...ATTAG|ACG | 1 | 1 | 15.387 |
61608654 | GT-AG | 0 | 1.1340178105802887e-05 | 76 | rna-XM_027350186.1 11132803 | 4 | 2373282 | 2373357 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTGTTCGA...TGATTTTTCATG/TGATTTTTCATG...TTTAG|TGC | 1 | 1 | 43.8 |
61608655 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027350186.1 11132803 | 5 | 2373777 | 2373831 | Dermatophagoides pteronyssinus 6956 | AAT|GTAAGACACT...CACTTCCTATTT/AATTTTCTGATA...TAAAG|CTA | 0 | 1 | 55.717 |
61608656 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-XM_027350186.1 11132803 | 6 | 2373968 | 2374032 | Dermatophagoides pteronyssinus 6956 | ATG|GTAAATAATA...ATCATTTTGATT/ATCATTTTGATT...TATAG|AGG | 1 | 1 | 59.585 |
61608657 | GT-AG | 0 | 2.936834166821344e-05 | 61 | rna-XM_027350186.1 11132803 | 7 | 2374201 | 2374261 | Dermatophagoides pteronyssinus 6956 | CTG|GTAGGATTTT...TTGTCCTAAATT/CTTGTCCTAAAT...ATCAG|GCA | 1 | 1 | 64.363 |
61608658 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-XM_027350186.1 11132803 | 8 | 2374361 | 2374424 | Dermatophagoides pteronyssinus 6956 | CTG|GTAAGTTAAA...AACTCTATAATT/ATAATTATCATT...TTCAG|GTA | 1 | 1 | 67.179 |
61608659 | GT-AG | 0 | 0.0884781960561569 | 63 | rna-XM_027350186.1 11132803 | 9 | 2374732 | 2374794 | Dermatophagoides pteronyssinus 6956 | TCA|GTATGTATTC...TACTTTTTGAAT/AATATTTTCATT...TACAG|ACG | 2 | 1 | 75.91 |
61608660 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027350186.1 11132803 | 10 | 2375027 | 2375081 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAAACTTT...ATTTTTTCAAAT/AATTTTTTCAAA...GATAG|CGT | 0 | 1 | 82.509 |
61608661 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027350186.1 11132803 | 11 | 2375269 | 2375328 | Dermatophagoides pteronyssinus 6956 | AAA|GTGAGTTTCT...TTATTGTTATCT/TCTTTTCTCAGA...AACAG|GTC | 1 | 1 | 87.827 |
61608662 | GT-AG | 0 | 0.0098448094494532 | 68 | rna-XM_027350186.1 11132803 | 12 | 2375473 | 2375540 | Dermatophagoides pteronyssinus 6956 | CCG|GTATGTATCC...AATTTCTTAAAA/AAATGATTCATC...AATAG|GTG | 1 | 1 | 91.923 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);