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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 11132801

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608645 GT-AG 0 0.0139657836037805 59 rna-XM_027338597.1 11132801 1 3205093 3205151 Dermatophagoides pteronyssinus 6956 TAG|GTATTTTCAG...TTTTTTTTGAAT/TTTTTTTTGAAT...TCCAG|CCA 2 1 46.503
61608646 GT-AG 0 0.0019936494570058 59 rna-XM_027338597.1 11132801 2 3204897 3204955 Dermatophagoides pteronyssinus 6956 AGG|GTTTGTTTTC...AGTTTTTTGATT/AGTTTTTTGATT...TATAG|AAG 1 1 50.367
61608647 GT-AG 0 0.0007939092381438 53 rna-XM_027338597.1 11132801 3 3204442 3204494 Dermatophagoides pteronyssinus 6956 CAG|GTTTGTTTTC...ATATTTTTATTC/GATATTTTTATT...CACAG|ATT 1 1 61.703
61608648 GT-AG 0 1.000000099473604e-05 64 rna-XM_027338597.1 11132801 4 3204135 3204198 Dermatophagoides pteronyssinus 6956 CTG|GTAAAACAAT...TTGATCTTAATT/TTGTAATTCATT...TGTAG|GTC 1 1 68.556
61608649 GT-AG 0 0.0002431824451335 64 rna-XM_027338597.1 11132801 5 3203643 3203706 Dermatophagoides pteronyssinus 6956 AAG|GTAACTAATT...TAATATTTATCA/TTGATACTAATT...AAAAG|ATC 0 1 80.626

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 22.341ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)