introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 11132799
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608625 | GT-AG | 0 | 6.922733224016747e-05 | 58 | rna-XM_027341547.1 11132799 | 1 | 268908 | 268965 | Dermatophagoides pteronyssinus 6956 | CAG|GTAAATTACA...TTTTTTTTAAAT/TTTTTTTTAAAT...CGTAG|ATA | 0 | 1 | 27.38 |
61608626 | GT-AG | 0 | 1.000000099473604e-05 | 103 | rna-XM_027341547.1 11132799 | 2 | 269116 | 269218 | Dermatophagoides pteronyssinus 6956 | CAG|GTTAGACAAC...CTTTTTTCAATT/ACTTTTTTCAAT...TTTAG|GAA | 0 | 1 | 31.592 |
61608627 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-XM_027341547.1 11132799 | 3 | 269320 | 269395 | Dermatophagoides pteronyssinus 6956 | GAG|GTAAGTAAAT...AACCACTTAATA/AGTTATGTAACC...AATAG|TCG | 2 | 1 | 34.429 |
61608628 | GT-AG | 0 | 1.6642698358111646e-05 | 83 | rna-XM_027341547.1 11132799 | 4 | 269414 | 269496 | Dermatophagoides pteronyssinus 6956 | TAG|GTAAGTTATA...ATTATTTTGATT/TTTATTTTCATT...TTCAG|CAT | 2 | 1 | 34.934 |
61608629 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-XM_027341547.1 11132799 | 5 | 269609 | 269680 | Dermatophagoides pteronyssinus 6956 | GAT|GTAAGTAAAT...ATAATATTGATC/ATAATATTGATC...AATAG|AAA | 0 | 1 | 38.079 |
61608630 | GT-AG | 0 | 2.564192201048636e-05 | 638 | rna-XM_027341547.1 11132799 | 6 | 269809 | 270446 | Dermatophagoides pteronyssinus 6956 | CAA|GTAAATAAAT...TTTGTTTTATTT/TTTTGTTTTATT...ATCAG|ATC | 2 | 1 | 41.674 |
61608631 | GT-AG | 0 | 1.000000099473604e-05 | 90 | rna-XM_027341547.1 11132799 | 7 | 270491 | 270580 | Dermatophagoides pteronyssinus 6956 | TTG|GTTAGTATTT...ATTTTTTTGACG/ATTTTTTTGACG...TACAG|GAA | 1 | 1 | 42.909 |
61608632 | GT-AG | 0 | 0.0001601931393525 | 79 | rna-XM_027341547.1 11132799 | 8 | 270696 | 270774 | Dermatophagoides pteronyssinus 6956 | CGG|GTAAATTTGA...ATAACATTAACT/TAACTTTTCACC...ACCAG|ACG | 2 | 1 | 46.139 |
61608633 | GT-AG | 0 | 7.18279296487776e-05 | 71 | rna-XM_027341547.1 11132799 | 9 | 270914 | 270984 | Dermatophagoides pteronyssinus 6956 | CCG|GTAAGTTTCT...TCGGTTTTGAAA/TTGAAATTGATT...ATCAG|TAT | 0 | 1 | 50.042 |
61608634 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-XM_027341547.1 11132799 | 10 | 271051 | 271114 | Dermatophagoides pteronyssinus 6956 | GAG|GTAAGTGATG...ATTTTTTTACTG/GATTTTTTTACT...TCCAG|ACA | 0 | 1 | 51.896 |
61608635 | GT-AG | 0 | 0.0001175300567073 | 74 | rna-XM_027341547.1 11132799 | 11 | 271481 | 271554 | Dermatophagoides pteronyssinus 6956 | ACG|GTAATTATTA...TTGATTTTGATT/TTGATTTTGATT...AACAG|TCA | 0 | 1 | 62.174 |
61608636 | GT-AG | 0 | 7.54794039215484e-05 | 57 | rna-XM_027341547.1 11132799 | 12 | 271672 | 271728 | Dermatophagoides pteronyssinus 6956 | AAT|GTAAGTTACT...AAAATTTTGAAT/TTCATTTTCATT...AATAG|ATA | 0 | 1 | 65.459 |
61608637 | GT-AG | 0 | 3.4997689082704096e-05 | 86 | rna-XM_027341547.1 11132799 | 13 | 272077 | 272162 | Dermatophagoides pteronyssinus 6956 | CAG|GTAAGTTTAA...GATTTTTTATCC/TTGATTTTGATT...AACAG|TTT | 0 | 1 | 75.232 |
61608638 | GT-AG | 0 | 1.000000099473604e-05 | 145 | rna-XM_027341547.1 11132799 | 14 | 272322 | 272466 | Dermatophagoides pteronyssinus 6956 | GAG|GTAAGAGCTT...TTTTCTTTAATC/TTATGTCTAACC...TATAG|GAA | 0 | 1 | 79.697 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);