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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 11132799

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608625 GT-AG 0 6.922733224016747e-05 58 rna-XM_027341547.1 11132799 1 268908 268965 Dermatophagoides pteronyssinus 6956 CAG|GTAAATTACA...TTTTTTTTAAAT/TTTTTTTTAAAT...CGTAG|ATA 0 1 27.38
61608626 GT-AG 0 1.000000099473604e-05 103 rna-XM_027341547.1 11132799 2 269116 269218 Dermatophagoides pteronyssinus 6956 CAG|GTTAGACAAC...CTTTTTTCAATT/ACTTTTTTCAAT...TTTAG|GAA 0 1 31.592
61608627 GT-AG 0 1.000000099473604e-05 76 rna-XM_027341547.1 11132799 3 269320 269395 Dermatophagoides pteronyssinus 6956 GAG|GTAAGTAAAT...AACCACTTAATA/AGTTATGTAACC...AATAG|TCG 2 1 34.429
61608628 GT-AG 0 1.6642698358111646e-05 83 rna-XM_027341547.1 11132799 4 269414 269496 Dermatophagoides pteronyssinus 6956 TAG|GTAAGTTATA...ATTATTTTGATT/TTTATTTTCATT...TTCAG|CAT 2 1 34.934
61608629 GT-AG 0 1.000000099473604e-05 72 rna-XM_027341547.1 11132799 5 269609 269680 Dermatophagoides pteronyssinus 6956 GAT|GTAAGTAAAT...ATAATATTGATC/ATAATATTGATC...AATAG|AAA 0 1 38.079
61608630 GT-AG 0 2.564192201048636e-05 638 rna-XM_027341547.1 11132799 6 269809 270446 Dermatophagoides pteronyssinus 6956 CAA|GTAAATAAAT...TTTGTTTTATTT/TTTTGTTTTATT...ATCAG|ATC 2 1 41.674
61608631 GT-AG 0 1.000000099473604e-05 90 rna-XM_027341547.1 11132799 7 270491 270580 Dermatophagoides pteronyssinus 6956 TTG|GTTAGTATTT...ATTTTTTTGACG/ATTTTTTTGACG...TACAG|GAA 1 1 42.909
61608632 GT-AG 0 0.0001601931393525 79 rna-XM_027341547.1 11132799 8 270696 270774 Dermatophagoides pteronyssinus 6956 CGG|GTAAATTTGA...ATAACATTAACT/TAACTTTTCACC...ACCAG|ACG 2 1 46.139
61608633 GT-AG 0 7.18279296487776e-05 71 rna-XM_027341547.1 11132799 9 270914 270984 Dermatophagoides pteronyssinus 6956 CCG|GTAAGTTTCT...TCGGTTTTGAAA/TTGAAATTGATT...ATCAG|TAT 0 1 50.042
61608634 GT-AG 0 1.000000099473604e-05 64 rna-XM_027341547.1 11132799 10 271051 271114 Dermatophagoides pteronyssinus 6956 GAG|GTAAGTGATG...ATTTTTTTACTG/GATTTTTTTACT...TCCAG|ACA 0 1 51.896
61608635 GT-AG 0 0.0001175300567073 74 rna-XM_027341547.1 11132799 11 271481 271554 Dermatophagoides pteronyssinus 6956 ACG|GTAATTATTA...TTGATTTTGATT/TTGATTTTGATT...AACAG|TCA 0 1 62.174
61608636 GT-AG 0 7.54794039215484e-05 57 rna-XM_027341547.1 11132799 12 271672 271728 Dermatophagoides pteronyssinus 6956 AAT|GTAAGTTACT...AAAATTTTGAAT/TTCATTTTCATT...AATAG|ATA 0 1 65.459
61608637 GT-AG 0 3.4997689082704096e-05 86 rna-XM_027341547.1 11132799 13 272077 272162 Dermatophagoides pteronyssinus 6956 CAG|GTAAGTTTAA...GATTTTTTATCC/TTGATTTTGATT...AACAG|TTT 0 1 75.232
61608638 GT-AG 0 1.000000099473604e-05 145 rna-XM_027341547.1 11132799 14 272322 272466 Dermatophagoides pteronyssinus 6956 GAG|GTAAGAGCTT...TTTTCTTTAATC/TTATGTCTAACC...TATAG|GAA 0 1 79.697

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.439ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)