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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11132795

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608608 GT-AG 0 1.000000099473604e-05 59 rna-XM_027342083.1 11132795 1 2767149 2767207 Dermatophagoides pteronyssinus 6956 GAG|GTTGGACACA...TTAATCTTCGTT/CTACTTTTCAAT...TTTAG|GGC 0 1 3.636
61608609 GT-AG 0 6.539057054052758e-05 54 rna-XM_027342083.1 11132795 2 2767281 2767334 Dermatophagoides pteronyssinus 6956 GTG|GTAAGCGTTT...TATTGTTTAACA/TATTGTTTAACA...ATTAG|CAA 1 1 5.647
61608610 GT-AG 0 0.002427251444285 60 rna-XM_027342083.1 11132795 3 2767487 2767546 Dermatophagoides pteronyssinus 6956 TTA|GTATGTGATT...CAATGCTTATCT/ACAATGCTTATC...TTCAG|ATG 0 1 9.835
61608611 GT-AG 0 0.0003414877940235 47 rna-XM_027342083.1 11132795 4 2768801 2768847 Dermatophagoides pteronyssinus 6956 ACT|GTAAGTTTTT...TTCATTGTAATT/CATATTTTCATT...CTTAG|TGC 0 1 44.38
61608612 GT-AG 0 1.000000099473604e-05 65 rna-XM_027342083.1 11132795 5 2769493 2769557 Dermatophagoides pteronyssinus 6956 TTG|GTGAGCTAAA...TTTTTTGTGATT/ATTTGATTTACT...GTTAG|CTT 0 1 62.149
61608613 GT-AG 0 0.0001181446094321 54 rna-XM_027342083.1 11132795 6 2769672 2769725 Dermatophagoides pteronyssinus 6956 AAG|GTTTTTATTT...TAGTGTTTAATA/TAGTGTTTAATA...CTTAG|AAT 0 1 65.289
61608614 GT-AG 0 0.0010755128514853 61 rna-XM_027342083.1 11132795 7 2769885 2769945 Dermatophagoides pteronyssinus 6956 TTG|GTATTTGCTA...TATTCATTACCA/GCATTATTCATT...TACAG|AAA 0 1 69.669
61608615 GT-AG 0 7.018579646321937e-05 48 rna-XM_027342083.1 11132795 8 2770825 2770872 Dermatophagoides pteronyssinus 6956 AAG|GTAACAATTT...AAATTATTAATT/ATTTTTTTTATT...CGTAG|AAA 0 1 93.884

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 21.96ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)