introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132795
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608608 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027342083.1 11132795 | 1 | 2767149 | 2767207 | Dermatophagoides pteronyssinus 6956 | GAG|GTTGGACACA...TTAATCTTCGTT/CTACTTTTCAAT...TTTAG|GGC | 0 | 1 | 3.636 |
61608609 | GT-AG | 0 | 6.539057054052758e-05 | 54 | rna-XM_027342083.1 11132795 | 2 | 2767281 | 2767334 | Dermatophagoides pteronyssinus 6956 | GTG|GTAAGCGTTT...TATTGTTTAACA/TATTGTTTAACA...ATTAG|CAA | 1 | 1 | 5.647 |
61608610 | GT-AG | 0 | 0.002427251444285 | 60 | rna-XM_027342083.1 11132795 | 3 | 2767487 | 2767546 | Dermatophagoides pteronyssinus 6956 | TTA|GTATGTGATT...CAATGCTTATCT/ACAATGCTTATC...TTCAG|ATG | 0 | 1 | 9.835 |
61608611 | GT-AG | 0 | 0.0003414877940235 | 47 | rna-XM_027342083.1 11132795 | 4 | 2768801 | 2768847 | Dermatophagoides pteronyssinus 6956 | ACT|GTAAGTTTTT...TTCATTGTAATT/CATATTTTCATT...CTTAG|TGC | 0 | 1 | 44.38 |
61608612 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-XM_027342083.1 11132795 | 5 | 2769493 | 2769557 | Dermatophagoides pteronyssinus 6956 | TTG|GTGAGCTAAA...TTTTTTGTGATT/ATTTGATTTACT...GTTAG|CTT | 0 | 1 | 62.149 |
61608613 | GT-AG | 0 | 0.0001181446094321 | 54 | rna-XM_027342083.1 11132795 | 6 | 2769672 | 2769725 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTTTATTT...TAGTGTTTAATA/TAGTGTTTAATA...CTTAG|AAT | 0 | 1 | 65.289 |
61608614 | GT-AG | 0 | 0.0010755128514853 | 61 | rna-XM_027342083.1 11132795 | 7 | 2769885 | 2769945 | Dermatophagoides pteronyssinus 6956 | TTG|GTATTTGCTA...TATTCATTACCA/GCATTATTCATT...TACAG|AAA | 0 | 1 | 69.669 |
61608615 | GT-AG | 0 | 7.018579646321937e-05 | 48 | rna-XM_027342083.1 11132795 | 8 | 2770825 | 2770872 | Dermatophagoides pteronyssinus 6956 | AAG|GTAACAATTT...AAATTATTAATT/ATTTTTTTTATT...CGTAG|AAA | 0 | 1 | 93.884 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);