introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132793
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Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608599 | GT-AG | 0 | 0.0001612628409656 | 81 | rna-XM_027349870.1 11132793 | 1 | 3188332 | 3188412 | Dermatophagoides pteronyssinus 6956 | ATT|GTAAGTAATT...TTCTTCTTGATA/AATTTATTTATT...ATTAG|TTT | 0 | 1 | 6.634 |
61608600 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-XM_027349870.1 11132793 | 2 | 3189045 | 3189107 | Dermatophagoides pteronyssinus 6956 | AAA|GTGAGTATTA...TCATTTTCAATA/ATGTAATTTATT...TTTAG|GTT | 2 | 1 | 23.679 |
61608601 | GA-AG | 0 | 4.5082692841786174e-05 | 900 | rna-XM_027349870.1 11132793 | 3 | 3189637 | 3190536 | Dermatophagoides pteronyssinus 6956 | AAT|GAAAAATCTA...AATATATTGATT/AATATATTGATT...TCTAG|TTC | 0 | 1 | 37.945 |
61608602 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027349870.1 11132793 | 4 | 3190901 | 3190955 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAGATTTT...ATAATTTTCACT/ATAATTTTCACT...CACAG|ATG | 1 | 1 | 47.762 |
61608603 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027349870.1 11132793 | 5 | 3191221 | 3191280 | Dermatophagoides pteronyssinus 6956 | CAA|GTAATGTGTA...TGTTTATTAATA/ATGTTGTTTATT...AAAAG|GAA | 2 | 1 | 54.908 |
61608604 | GT-AG | 0 | 1.000000099473604e-05 | 1101 | rna-XM_027349870.1 11132793 | 6 | 3191777 | 3192877 | Dermatophagoides pteronyssinus 6956 | CTG|GTTAATCACA...TTTGTTTTGATT/TTTGTTTTGATT...ATTAG|TAT | 0 | 1 | 68.285 |
61608605 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-XM_027349870.1 11132793 | 7 | 3193525 | 3193582 | Dermatophagoides pteronyssinus 6956 | GAG|GTGAGTTTTC...GTTTCTTTGATA/ATTTTTCTGATA...AAAAG|AGC | 2 | 1 | 85.734 |
61608606 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-XM_027349870.1 11132793 | 8 | 3193990 | 3194046 | Dermatophagoides pteronyssinus 6956 | AAG|GTAATTGAAT...ATGATTTTAGTT/TAGTTTCTGACA...TATAG|TAA | 1 | 1 | 96.71 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);