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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11132790

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608585 GT-AG 0 0.0006151743860476 65 rna-XM_027340924.1 11132790 1 3120129 3120193 Dermatophagoides pteronyssinus 6956 CAG|GTATGATTTT...CTTTCTTTCATA/CTTTCTTTCATA...TATAG|TCA 0 1 6.693
61608586 GT-AG 0 0.0002053612890387 2441 rna-XM_027340924.1 11132790 2 3120260 3122700 Dermatophagoides pteronyssinus 6956 AAT|GTAAGTTTAT...TTATCATTATCA/ATTATTATCATT...TATAG|ATA 0 1 8.446
61608587 GT-AG 0 1.000000099473604e-05 374 rna-XM_027340924.1 11132790 3 3122791 3123164 Dermatophagoides pteronyssinus 6956 AAG|GTTAGTCATG...TCATCATTATTT/ATCATCATTATT...AACAG|AGT 0 1 10.837
61608588 GC-AG 0 1.000000099473604e-05 3282 rna-XM_027340924.1 11132790 4 3123455 3126736 Dermatophagoides pteronyssinus 6956 AAG|GCAAGTTATT...TATTATTTATTT/TTATTATTTATT...TATAG|AAA 2 1 18.539
61608589 GT-AG 0 0.0024897933051987 1149 rna-XM_027340924.1 11132790 5 3126934 3128082 Dermatophagoides pteronyssinus 6956 GAG|GTATGTTGTA...TTTTTTGTGATC/TTTTTTGTGATC...ATCAG|TTG 1 1 23.772
61608590 GT-AG 0 1.000000099473604e-05 71 rna-XM_027340924.1 11132790 6 3128725 3128795 Dermatophagoides pteronyssinus 6956 GAG|GTGAGATTTT...AAATCATTAATC/TCATTAATCATT...ATTAG|ATG 1 1 40.823
61608591 GT-AG 0 1.000000099473604e-05 71 rna-XM_027340924.1 11132790 7 3128919 3128989 Dermatophagoides pteronyssinus 6956 TAA|GTAAGTAAAA...AATTTTTTATTT/TAATTTTTTATT...TATAG|TTA 1 1 44.09
61608592 GT-AG 0 1.000000099473604e-05 66 rna-XM_027340924.1 11132790 8 3130012 3130077 Dermatophagoides pteronyssinus 6956 AAG|GTAAATAATA...ATATCTTTATTT/CTTTATTTTATT...CATAG|ATG 0 1 71.235

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 90.752ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)