introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132790
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608585 | GT-AG | 0 | 0.0006151743860476 | 65 | rna-XM_027340924.1 11132790 | 1 | 3120129 | 3120193 | Dermatophagoides pteronyssinus 6956 | CAG|GTATGATTTT...CTTTCTTTCATA/CTTTCTTTCATA...TATAG|TCA | 0 | 1 | 6.693 |
61608586 | GT-AG | 0 | 0.0002053612890387 | 2441 | rna-XM_027340924.1 11132790 | 2 | 3120260 | 3122700 | Dermatophagoides pteronyssinus 6956 | AAT|GTAAGTTTAT...TTATCATTATCA/ATTATTATCATT...TATAG|ATA | 0 | 1 | 8.446 |
61608587 | GT-AG | 0 | 1.000000099473604e-05 | 374 | rna-XM_027340924.1 11132790 | 3 | 3122791 | 3123164 | Dermatophagoides pteronyssinus 6956 | AAG|GTTAGTCATG...TCATCATTATTT/ATCATCATTATT...AACAG|AGT | 0 | 1 | 10.837 |
61608588 | GC-AG | 0 | 1.000000099473604e-05 | 3282 | rna-XM_027340924.1 11132790 | 4 | 3123455 | 3126736 | Dermatophagoides pteronyssinus 6956 | AAG|GCAAGTTATT...TATTATTTATTT/TTATTATTTATT...TATAG|AAA | 2 | 1 | 18.539 |
61608589 | GT-AG | 0 | 0.0024897933051987 | 1149 | rna-XM_027340924.1 11132790 | 5 | 3126934 | 3128082 | Dermatophagoides pteronyssinus 6956 | GAG|GTATGTTGTA...TTTTTTGTGATC/TTTTTTGTGATC...ATCAG|TTG | 1 | 1 | 23.772 |
61608590 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-XM_027340924.1 11132790 | 6 | 3128725 | 3128795 | Dermatophagoides pteronyssinus 6956 | GAG|GTGAGATTTT...AAATCATTAATC/TCATTAATCATT...ATTAG|ATG | 1 | 1 | 40.823 |
61608591 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-XM_027340924.1 11132790 | 7 | 3128919 | 3128989 | Dermatophagoides pteronyssinus 6956 | TAA|GTAAGTAAAA...AATTTTTTATTT/TAATTTTTTATT...TATAG|TTA | 1 | 1 | 44.09 |
61608592 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-XM_027340924.1 11132790 | 8 | 3130012 | 3130077 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAATAATA...ATATCTTTATTT/CTTTATTTTATT...CATAG|ATG | 0 | 1 | 71.235 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);