introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132789
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608577 | GT-AG | 0 | 0.0761593567510268 | 62 | rna-XM_027339286.1 11132789 | 1 | 2568970 | 2569031 | Dermatophagoides pteronyssinus 6956 | CAA|GTATGTTTAT...AATTTTTTAATG/AATTTTTTAATG...TACAG|GGA | 0 | 1 | 35.294 |
61608578 | GT-AG | 0 | 0.0575966587658754 | 57 | rna-XM_027339286.1 11132789 | 2 | 2569204 | 2569260 | Dermatophagoides pteronyssinus 6956 | CTG|GTATGTTTTG...TATTTTTTATTT/TTATTTTTTATT...TATAG|CTG | 1 | 1 | 39.852 |
61608579 | GT-AG | 0 | 1.000000099473604e-05 | 86 | rna-XM_027339286.1 11132789 | 3 | 2569443 | 2569528 | Dermatophagoides pteronyssinus 6956 | CAA|GTTCGTAAAT...TATTCTTTAAAT/AATTTATTTATT...TGTAG|TCA | 0 | 1 | 44.674 |
61608580 | GT-AG | 0 | 1.000000099473604e-05 | 6758 | rna-XM_027339286.1 11132789 | 4 | 2570176 | 2576933 | Dermatophagoides pteronyssinus 6956 | GAG|GTAGATGCCT...AATTTTTTATTG/TTTTTATTGATT...TATAG|CAA | 2 | 1 | 61.818 |
61608581 | GT-AG | 0 | 0.0010619346993081 | 226 | rna-XM_027339286.1 11132789 | 5 | 2577154 | 2577379 | Dermatophagoides pteronyssinus 6956 | GAG|GTATGTTCAA...TGTTATTTAATT/TTGTTTTTCATC...TGAAG|AAC | 0 | 1 | 67.647 |
61608582 | GT-AG | 0 | 2.0783651689389496e-05 | 220 | rna-XM_027339286.1 11132789 | 6 | 2577734 | 2577953 | Dermatophagoides pteronyssinus 6956 | CAG|GTGCGTTTGA...TTATCTTTGATT/CTTTGATTCATT...AATAG|TAT | 0 | 1 | 77.027 |
61608583 | GT-AG | 0 | 1.000000099473604e-05 | 429 | rna-XM_027339286.1 11132789 | 7 | 2578621 | 2579049 | Dermatophagoides pteronyssinus 6956 | TGG|GTAATGTATT...TAATTCCTAATG/TTTTGTTTCATA...AACAG|ATG | 1 | 1 | 94.701 |
61608584 | GT-AG | 0 | 0.0001578302534673 | 553 | rna-XM_027339286.1 11132789 | 8 | 2579144 | 2579696 | Dermatophagoides pteronyssinus 6956 | ATT|GTAAGTTGGA...AAATCCTTTACA/CCCGTATTCATT...ATAAG|GTG | 2 | 1 | 97.191 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);