introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 11132788
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608570 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-XM_027341304.1 11132788 | 1 | 1827307 | 1827364 | Dermatophagoides pteronyssinus 6956 | AAG|GTGAAACTAA...GATTCATTGAAT/TTAATATTGATG...TCTAG|ATG | 0 | 1 | 1.731 |
61608571 | GT-AG | 0 | 0.0006910946334273 | 58 | rna-XM_027341304.1 11132788 | 2 | 1827079 | 1827136 | Dermatophagoides pteronyssinus 6956 | ATG|GTATGGTTTA...TTTTTTTCAAAT/TCTATTTTCATA...TTCAG|CCT | 2 | 1 | 6.189 |
61608572 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-XM_027341304.1 11132788 | 3 | 1826800 | 1826861 | Dermatophagoides pteronyssinus 6956 | TTG|GTAAGTGAAA...AAATTTTTAATA/AATTGATTGATT...CTTAG|AAC | 0 | 1 | 11.88 |
61608573 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-XM_027341304.1 11132788 | 4 | 1825227 | 1825291 | Dermatophagoides pteronyssinus 6956 | CAG|GTAAGTCTTT...TTTTCTTCAACT/TTGCTATTAATT...TAAAG|TAC | 2 | 1 | 51.429 |
61608574 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-XM_027341304.1 11132788 | 5 | 1823850 | 1823902 | Dermatophagoides pteronyssinus 6956 | AAG|GTACGTAAAA...TTTTTCTAATCA/CTTTTTCTAATC...AACAG|CCG | 0 | 1 | 86.153 |
61608575 | GT-AG | 0 | 0.0001381620595872 | 57 | rna-XM_027341304.1 11132788 | 6 | 1823549 | 1823605 | Dermatophagoides pteronyssinus 6956 | AAC|GTAAGTCTTT...TTATTTTTATCA/ATTATTTTTATC...CTTAG|GAT | 1 | 1 | 92.552 |
61608576 | GT-AG | 0 | 0.0001347031875196 | 60 | rna-XM_027341304.1 11132788 | 7 | 1823342 | 1823401 | Dermatophagoides pteronyssinus 6956 | CTG|GTTTGTATTA...CTACCATTAATT/ATTAATTTTATA...CATAG|ATA | 1 | 1 | 96.407 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);