introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132787
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608562 | GT-AG | 0 | 4.4544344881575134e-05 | 26065 | rna-XM_027350165.1 11132787 | 1 | 2215219 | 2241283 | Dermatophagoides pteronyssinus 6956 | CAG|GTAGTTATTG...TATATTTTATTT/TATTTCTTCATT...AATAG|ATT | 1 | 1 | 19.143 |
61608563 | GT-AG | 0 | 1.000000099473604e-05 | 1887 | rna-XM_027350165.1 11132787 | 2 | 2241425 | 2243311 | Dermatophagoides pteronyssinus 6956 | TAG|GTCAGTGTTT...AATTCTTTGGTT/ACATTTTTCATC...TACAG|GAT | 1 | 1 | 22.781 |
61608564 | GT-AG | 0 | 1.000000099473604e-05 | 1052 | rna-XM_027350165.1 11132787 | 3 | 2243501 | 2244552 | Dermatophagoides pteronyssinus 6956 | AAG|GTAGGTCCAA...TGAATTTTGATT/GTTTGTTTCATT...CGCAG|GTT | 1 | 1 | 27.657 |
61608565 | GT-AG | 0 | 1.000000099473604e-05 | 877 | rna-XM_027350165.1 11132787 | 4 | 2244669 | 2245545 | Dermatophagoides pteronyssinus 6956 | TTG|GTAAGTGAAA...TTTTCTTTGATC/TTTTTTGTTATT...TGTAG|GAT | 0 | 1 | 30.65 |
61608566 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-XM_027350165.1 11132787 | 5 | 2245966 | 2246026 | Dermatophagoides pteronyssinus 6956 | CAA|GTAAGTTATT...AAAAATTTGATA/TTTTCACTCAGT...TTCAG|GCT | 0 | 1 | 41.486 |
61608567 | GT-AG | 0 | 1.000000099473604e-05 | 121 | rna-XM_027350165.1 11132787 | 6 | 2246309 | 2246429 | Dermatophagoides pteronyssinus 6956 | AAT|GTAATAAAAT...GGCTCTATGAAC/TATGAACAAATC...AACAG|CAA | 0 | 1 | 48.762 |
61608568 | GT-AG | 0 | 0.0003075655673973 | 62 | rna-XM_027350165.1 11132787 | 7 | 2246717 | 2246778 | Dermatophagoides pteronyssinus 6956 | TGG|GTTTGTATTA...AACTTTTTGATT/TTTGATTTAATT...TTCAG|GGA | 2 | 1 | 56.166 |
61608569 | GT-AG | 0 | 0.0001786276461381 | 62 | rna-XM_027350165.1 11132787 | 8 | 2247797 | 2247858 | Dermatophagoides pteronyssinus 6956 | GAG|GTATTGATTT...TTTTTTCTAATT/TTTTTTCTAATT...TATAG|ATA | 0 | 1 | 82.43 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);