home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

17 rows where transcript_id = 11132786

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608545 GT-AG 0 0.000206347312098 2251 rna-XM_027348299.1 11132786 1 2940501 2942751 Dermatophagoides pteronyssinus 6956 GCG|GTATGTAAAA...TTCTCTTCAATT/ATTTAATTAATT...TATAG|GTT 1 1 13.848
61608546 GT-AG 0 0.0066891903372413 581 rna-XM_027348299.1 11132786 2 2942860 2943440 Dermatophagoides pteronyssinus 6956 GTG|GTATGTATTA...ATTCTTTTATTT/TTTCTTTTCATC...TATAG|AAA 1 1 16.628
61608547 GT-AG 0 3.374107653754956e-05 1232 rna-XM_027348299.1 11132786 3 2943558 2944789 Dermatophagoides pteronyssinus 6956 GTA|GTAAGTGTTT...TCATTTTTATTC/TTTTTATTCATT...TTCAG|CTC 1 1 19.64
61608548 GT-AG 0 0.042519645238591 103 rna-XM_027348299.1 11132786 4 2944916 2945018 Dermatophagoides pteronyssinus 6956 TGG|GTATGTTATT...CTCTTTTTGATG/CTCTTTTTGATG...CAAAG|ATT 1 1 22.883
61608549 GT-AG 0 1.000000099473604e-05 3091 rna-XM_027348299.1 11132786 5 2945118 2948208 Dermatophagoides pteronyssinus 6956 GAT|GTAAGTAGGT...TTTTTTTTCATA/TTTTTTTTCATA...ACAAG|GCC 1 1 25.431
61608550 GT-AG 0 0.0007061309376749 62 rna-XM_027348299.1 11132786 6 2948353 2948414 Dermatophagoides pteronyssinus 6956 ATG|GTAAACTAAT...GAGCCTTTAACA/TAAATGTTTACA...ATTAG|GCG 1 1 29.138
61608551 GT-AG 0 1.000000099473604e-05 152 rna-XM_027348299.1 11132786 7 2948568 2948719 Dermatophagoides pteronyssinus 6956 GTG|GTGAGTAATA...TATTTCTGATAC/AACATTTTCATT...CTCAG|GTT 1 1 33.076
61608552 GT-AG 0 1.000000099473604e-05 56 rna-XM_027348299.1 11132786 8 2948852 2948907 Dermatophagoides pteronyssinus 6956 GTG|GTAAGTAAAT...ATCATTTTATTG/TATTACTTCATC...ATAAG|ATA 1 1 36.474
61608553 GT-AG 0 0.000440888758745 340 rna-XM_027348299.1 11132786 9 2949433 2949772 Dermatophagoides pteronyssinus 6956 GTC|GTAAGTTTTC...ATTATTTTACAA/TCTATTTTCATT...TTTAG|CAT 1 1 49.987
61608554 GT-AG 0 0.0135331996810515 110 rna-XM_027348299.1 11132786 10 2949885 2949994 Dermatophagoides pteronyssinus 6956 AAT|GTATGTTATT...TCATTTTTATAA/TTCATTTTTATA...TAAAG|GAT 2 1 52.87
61608555 GT-AG 0 0.0001026122645283 103 rna-XM_027348299.1 11132786 11 2950142 2950244 Dermatophagoides pteronyssinus 6956 TCT|GTAAGTGTAT...TATTCTATAACC/CTATTTTTCAAT...TCAAG|ACA 2 1 56.654
61608556 GT-AG 0 1.000000099473604e-05 1267 rna-XM_027348299.1 11132786 12 2950317 2951583 Dermatophagoides pteronyssinus 6956 ATT|GTAAGTATTT...TGTGTGTTTGTA/ACAAATATGAAT...TGCAG|AAG 2 1 58.507
61608557 GT-AG 0 0.0011298704433239 244 rna-XM_027348299.1 11132786 13 2951656 2951899 Dermatophagoides pteronyssinus 6956 ATT|GTACGTATTA...GGTACCACAACA/TGGTACCACAAC...ATCAG|AGA 2 1 60.36
61608558 GT-AG 0 0.0001264765485907 302 rna-XM_027348299.1 11132786 14 2951972 2952273 Dermatophagoides pteronyssinus 6956 CCT|GTAGGTATTA...AAACTCTTGTAA/ACTCTTGTAAAT...TAAAG|TGA 2 1 62.214
61608559 GT-AG 0 4.9195365580140405e-05 266 rna-XM_027348299.1 11132786 15 2952346 2952611 Dermatophagoides pteronyssinus 6956 TAT|GTAAGTAATG...TTTATTTTATTT/ATTTATTTTATT...AATAG|AGA 2 1 64.067
61608560 GT-AG 0 1.000000099473604e-05 62 rna-XM_027348299.1 11132786 16 2952684 2952745 Dermatophagoides pteronyssinus 6956 AAT|GTAAGTGGAA...TAATCATTGATC/TAATCATTGATC...TGTAG|TAC 2 1 65.92
61608561 GT-AG 0 7.51678045610019e-05 60 rna-XM_027348299.1 11132786 17 2953037 2953096 Dermatophagoides pteronyssinus 6956 TCG|GTACGTACAG...TTTGTTTTAATT/TTTGTTTTAATT...TATAG|GGG 2 1 73.411

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 30.717ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)