introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
17 rows where transcript_id = 11132786
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608545 | GT-AG | 0 | 0.000206347312098 | 2251 | rna-XM_027348299.1 11132786 | 1 | 2940501 | 2942751 | Dermatophagoides pteronyssinus 6956 | GCG|GTATGTAAAA...TTCTCTTCAATT/ATTTAATTAATT...TATAG|GTT | 1 | 1 | 13.848 |
61608546 | GT-AG | 0 | 0.0066891903372413 | 581 | rna-XM_027348299.1 11132786 | 2 | 2942860 | 2943440 | Dermatophagoides pteronyssinus 6956 | GTG|GTATGTATTA...ATTCTTTTATTT/TTTCTTTTCATC...TATAG|AAA | 1 | 1 | 16.628 |
61608547 | GT-AG | 0 | 3.374107653754956e-05 | 1232 | rna-XM_027348299.1 11132786 | 3 | 2943558 | 2944789 | Dermatophagoides pteronyssinus 6956 | GTA|GTAAGTGTTT...TCATTTTTATTC/TTTTTATTCATT...TTCAG|CTC | 1 | 1 | 19.64 |
61608548 | GT-AG | 0 | 0.042519645238591 | 103 | rna-XM_027348299.1 11132786 | 4 | 2944916 | 2945018 | Dermatophagoides pteronyssinus 6956 | TGG|GTATGTTATT...CTCTTTTTGATG/CTCTTTTTGATG...CAAAG|ATT | 1 | 1 | 22.883 |
61608549 | GT-AG | 0 | 1.000000099473604e-05 | 3091 | rna-XM_027348299.1 11132786 | 5 | 2945118 | 2948208 | Dermatophagoides pteronyssinus 6956 | GAT|GTAAGTAGGT...TTTTTTTTCATA/TTTTTTTTCATA...ACAAG|GCC | 1 | 1 | 25.431 |
61608550 | GT-AG | 0 | 0.0007061309376749 | 62 | rna-XM_027348299.1 11132786 | 6 | 2948353 | 2948414 | Dermatophagoides pteronyssinus 6956 | ATG|GTAAACTAAT...GAGCCTTTAACA/TAAATGTTTACA...ATTAG|GCG | 1 | 1 | 29.138 |
61608551 | GT-AG | 0 | 1.000000099473604e-05 | 152 | rna-XM_027348299.1 11132786 | 7 | 2948568 | 2948719 | Dermatophagoides pteronyssinus 6956 | GTG|GTGAGTAATA...TATTTCTGATAC/AACATTTTCATT...CTCAG|GTT | 1 | 1 | 33.076 |
61608552 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-XM_027348299.1 11132786 | 8 | 2948852 | 2948907 | Dermatophagoides pteronyssinus 6956 | GTG|GTAAGTAAAT...ATCATTTTATTG/TATTACTTCATC...ATAAG|ATA | 1 | 1 | 36.474 |
61608553 | GT-AG | 0 | 0.000440888758745 | 340 | rna-XM_027348299.1 11132786 | 9 | 2949433 | 2949772 | Dermatophagoides pteronyssinus 6956 | GTC|GTAAGTTTTC...ATTATTTTACAA/TCTATTTTCATT...TTTAG|CAT | 1 | 1 | 49.987 |
61608554 | GT-AG | 0 | 0.0135331996810515 | 110 | rna-XM_027348299.1 11132786 | 10 | 2949885 | 2949994 | Dermatophagoides pteronyssinus 6956 | AAT|GTATGTTATT...TCATTTTTATAA/TTCATTTTTATA...TAAAG|GAT | 2 | 1 | 52.87 |
61608555 | GT-AG | 0 | 0.0001026122645283 | 103 | rna-XM_027348299.1 11132786 | 11 | 2950142 | 2950244 | Dermatophagoides pteronyssinus 6956 | TCT|GTAAGTGTAT...TATTCTATAACC/CTATTTTTCAAT...TCAAG|ACA | 2 | 1 | 56.654 |
61608556 | GT-AG | 0 | 1.000000099473604e-05 | 1267 | rna-XM_027348299.1 11132786 | 12 | 2950317 | 2951583 | Dermatophagoides pteronyssinus 6956 | ATT|GTAAGTATTT...TGTGTGTTTGTA/ACAAATATGAAT...TGCAG|AAG | 2 | 1 | 58.507 |
61608557 | GT-AG | 0 | 0.0011298704433239 | 244 | rna-XM_027348299.1 11132786 | 13 | 2951656 | 2951899 | Dermatophagoides pteronyssinus 6956 | ATT|GTACGTATTA...GGTACCACAACA/TGGTACCACAAC...ATCAG|AGA | 2 | 1 | 60.36 |
61608558 | GT-AG | 0 | 0.0001264765485907 | 302 | rna-XM_027348299.1 11132786 | 14 | 2951972 | 2952273 | Dermatophagoides pteronyssinus 6956 | CCT|GTAGGTATTA...AAACTCTTGTAA/ACTCTTGTAAAT...TAAAG|TGA | 2 | 1 | 62.214 |
61608559 | GT-AG | 0 | 4.9195365580140405e-05 | 266 | rna-XM_027348299.1 11132786 | 15 | 2952346 | 2952611 | Dermatophagoides pteronyssinus 6956 | TAT|GTAAGTAATG...TTTATTTTATTT/ATTTATTTTATT...AATAG|AGA | 2 | 1 | 64.067 |
61608560 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-XM_027348299.1 11132786 | 16 | 2952684 | 2952745 | Dermatophagoides pteronyssinus 6956 | AAT|GTAAGTGGAA...TAATCATTGATC/TAATCATTGATC...TGTAG|TAC | 2 | 1 | 65.92 |
61608561 | GT-AG | 0 | 7.51678045610019e-05 | 60 | rna-XM_027348299.1 11132786 | 17 | 2953037 | 2953096 | Dermatophagoides pteronyssinus 6956 | TCG|GTACGTACAG...TTTGTTTTAATT/TTTGTTTTAATT...TATAG|GGG | 2 | 1 | 73.411 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);