introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
23 rows where transcript_id = 11132779
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608500 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027348905.1 11132779 | 1 | 2660101 | 2660155 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAGTTTAA...TTATGTTTAAAG/ATTATGTTTAAA...AATAG|TCA | 0 | 1 | 0.799 |
61608501 | GT-AG | 0 | 0.0001004548721791 | 59 | rna-XM_027348905.1 11132779 | 2 | 2659801 | 2659859 | Dermatophagoides pteronyssinus 6956 | TTG|GTTTGTATTT...ATTGTCGTATCA/ACATAACTGACC...AATAG|ATA | 1 | 1 | 6.638 |
61608502 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-XM_027348905.1 11132779 | 3 | 2659666 | 2659735 | Dermatophagoides pteronyssinus 6956 | ACG|GTGTGTGTGT...ACTGATTTGATT/ACTGATTTGATT...AACAG|ACA | 0 | 1 | 8.212 |
61608503 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-XM_027348905.1 11132779 | 4 | 2659500 | 2659563 | Dermatophagoides pteronyssinus 6956 | GAT|GTAAGTAACA...AATTTCTTTTCT/TCTTTTCTAATC...TCAAG|GGT | 0 | 1 | 10.683 |
61608504 | GT-AG | 0 | 0.0432079005002866 | 67 | rna-XM_027348905.1 11132779 | 5 | 2659335 | 2659401 | Dermatophagoides pteronyssinus 6956 | AAT|GTATGTATTT...GTTATTTTAAAT/GTTATTTTAAAT...GTTAG|AAA | 2 | 1 | 13.057 |
61608505 | GT-AG | 0 | 0.0006338166819239 | 54 | rna-XM_027348905.1 11132779 | 6 | 2659010 | 2659063 | Dermatophagoides pteronyssinus 6956 | TCT|GTAAGTTTAA...GTTTTATTGATT/GTTTTATTGATT...TTTAG|GCT | 0 | 1 | 19.622 |
61608506 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027348905.1 11132779 | 7 | 2658851 | 2658910 | Dermatophagoides pteronyssinus 6956 | CTG|GTAAGTAAAA...ATGATTTTGATC/ATGATTTTGATC...ATAAG|GCT | 0 | 1 | 22.02 |
61608507 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027348905.1 11132779 | 8 | 2658673 | 2658732 | Dermatophagoides pteronyssinus 6956 | TAA|GTAAGTAGAT...TAACATTTAACT/AACTGTTTAACC...CGCAG|AGC | 1 | 1 | 24.879 |
61608508 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027348905.1 11132779 | 9 | 2658230 | 2658289 | Dermatophagoides pteronyssinus 6956 | AAG|GTATAAAAAA...ATGGTTTCAATC/TTCAATCTGATT...ATCAG|GCC | 0 | 1 | 34.157 |
61608509 | GT-AG | 0 | 5.376883722765279e-05 | 64 | rna-XM_027348905.1 11132779 | 10 | 2657785 | 2657848 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTGTTTAT...TTTCTTCTGATG/TTTCTTCTGATG...TTTAG|ATA | 0 | 1 | 43.387 |
61608510 | GT-AG | 0 | 0.0066529304737087 | 67 | rna-XM_027348905.1 11132779 | 11 | 2657517 | 2657583 | Dermatophagoides pteronyssinus 6956 | ACT|GTACTTATTG...TCTAACTTATTC/TTTATTCTGATA...AATAG|ATT | 0 | 1 | 48.256 |
61608511 | GT-AG | 0 | 0.0033400826321844 | 63 | rna-XM_027348905.1 11132779 | 12 | 2657191 | 2657253 | Dermatophagoides pteronyssinus 6956 | TCA|GTAATTTTGA...ATTTCCTTTTTT/TTAAACCTAATC...TCAAG|CGA | 2 | 1 | 54.627 |
61608512 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-XM_027348905.1 11132779 | 13 | 2657067 | 2657117 | Dermatophagoides pteronyssinus 6956 | CAG|GTAAGTGTAA...ACTTTGTTAATA/ACTTTGTTAATA...AACAG|CCT | 0 | 1 | 56.395 |
61608513 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027348905.1 11132779 | 14 | 2656745 | 2656804 | Dermatophagoides pteronyssinus 6956 | AAA|GTCAGTTATT...TAACTTTTGAAT/TAACTTTTGAAT...TATAG|ATG | 1 | 1 | 62.742 |
61608514 | GT-AG | 0 | 6.783218627216096e-05 | 54 | rna-XM_027348905.1 11132779 | 15 | 2656561 | 2656614 | Dermatophagoides pteronyssinus 6956 | AAA|GTAAATTAGT...TGTTTCTGAATC/ATGTTTCTGAAT...GATAG|ACT | 2 | 1 | 65.891 |
61608515 | GT-AG | 0 | 0.0008431061043475 | 54 | rna-XM_027348905.1 11132779 | 16 | 2656441 | 2656494 | Dermatophagoides pteronyssinus 6956 | CAA|GTATGTGATG...TTTTCATTATCA/AACATTTTCATT...GTTAG|TCT | 2 | 1 | 67.49 |
61608516 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-XM_027348905.1 11132779 | 17 | 2656162 | 2656217 | Dermatophagoides pteronyssinus 6956 | ATG|GTAGGTGGAT...TTGTTTTTAGTT/TTTTTAGTTATT...TCCAG|ATG | 0 | 1 | 72.892 |
61608517 | GT-AG | 0 | 0.0086699076181166 | 51 | rna-XM_027348905.1 11132779 | 18 | 2656029 | 2656079 | Dermatophagoides pteronyssinus 6956 | AAA|GTATAATCTA...ATGTCATTAATT/ATTAATTTAATT...TAAAG|CTA | 1 | 1 | 74.879 |
61608518 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-XM_027348905.1 11132779 | 19 | 2655790 | 2655839 | Dermatophagoides pteronyssinus 6956 | CAG|GTAAGTGAAA...ATTGCCTGATTA/CACAATCTCATT...TATAG|GCG | 1 | 1 | 79.457 |
61608519 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027348905.1 11132779 | 20 | 2655564 | 2655623 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTTAATTT...ACTCTCTAAGCT/TCTAAGCTAATT...TTTAG|GCC | 2 | 1 | 83.479 |
61608520 | GT-AG | 0 | 0.0014074790051324 | 54 | rna-XM_027348905.1 11132779 | 21 | 2655455 | 2655508 | Dermatophagoides pteronyssinus 6956 | GAA|GTATGTGTAA...AATTATTTATCA/TTATTTATCATT...GACAG|ATA | 0 | 1 | 84.811 |
61608521 | GT-AG | 0 | 0.0018307303174697 | 52 | rna-XM_027348905.1 11132779 | 22 | 2655268 | 2655319 | Dermatophagoides pteronyssinus 6956 | TAC|GTATGTAAGA...ATTCTATTGATA/ATTCTATTGATA...TCAAG|TGT | 0 | 1 | 88.081 |
61608522 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-XM_027348905.1 11132779 | 23 | 2654965 | 2655042 | Dermatophagoides pteronyssinus 6956 | CGA|GTAAGATAGA...TTTAGTTTGACT/TTTAGTTTGACT...TATAG|TCG | 0 | 1 | 93.532 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);