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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

23 rows where transcript_id = 11132779

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608500 GT-AG 0 1.000000099473604e-05 55 rna-XM_027348905.1 11132779 1 2660101 2660155 Dermatophagoides pteronyssinus 6956 AAG|GTAAGTTTAA...TTATGTTTAAAG/ATTATGTTTAAA...AATAG|TCA 0 1 0.799
61608501 GT-AG 0 0.0001004548721791 59 rna-XM_027348905.1 11132779 2 2659801 2659859 Dermatophagoides pteronyssinus 6956 TTG|GTTTGTATTT...ATTGTCGTATCA/ACATAACTGACC...AATAG|ATA 1 1 6.638
61608502 GT-AG 0 1.000000099473604e-05 70 rna-XM_027348905.1 11132779 3 2659666 2659735 Dermatophagoides pteronyssinus 6956 ACG|GTGTGTGTGT...ACTGATTTGATT/ACTGATTTGATT...AACAG|ACA 0 1 8.212
61608503 GT-AG 0 1.000000099473604e-05 64 rna-XM_027348905.1 11132779 4 2659500 2659563 Dermatophagoides pteronyssinus 6956 GAT|GTAAGTAACA...AATTTCTTTTCT/TCTTTTCTAATC...TCAAG|GGT 0 1 10.683
61608504 GT-AG 0 0.0432079005002866 67 rna-XM_027348905.1 11132779 5 2659335 2659401 Dermatophagoides pteronyssinus 6956 AAT|GTATGTATTT...GTTATTTTAAAT/GTTATTTTAAAT...GTTAG|AAA 2 1 13.057
61608505 GT-AG 0 0.0006338166819239 54 rna-XM_027348905.1 11132779 6 2659010 2659063 Dermatophagoides pteronyssinus 6956 TCT|GTAAGTTTAA...GTTTTATTGATT/GTTTTATTGATT...TTTAG|GCT 0 1 19.622
61608506 GT-AG 0 1.000000099473604e-05 60 rna-XM_027348905.1 11132779 7 2658851 2658910 Dermatophagoides pteronyssinus 6956 CTG|GTAAGTAAAA...ATGATTTTGATC/ATGATTTTGATC...ATAAG|GCT 0 1 22.02
61608507 GT-AG 0 1.000000099473604e-05 60 rna-XM_027348905.1 11132779 8 2658673 2658732 Dermatophagoides pteronyssinus 6956 TAA|GTAAGTAGAT...TAACATTTAACT/AACTGTTTAACC...CGCAG|AGC 1 1 24.879
61608508 GT-AG 0 1.000000099473604e-05 60 rna-XM_027348905.1 11132779 9 2658230 2658289 Dermatophagoides pteronyssinus 6956 AAG|GTATAAAAAA...ATGGTTTCAATC/TTCAATCTGATT...ATCAG|GCC 0 1 34.157
61608509 GT-AG 0 5.376883722765279e-05 64 rna-XM_027348905.1 11132779 10 2657785 2657848 Dermatophagoides pteronyssinus 6956 AAG|GTTTGTTTAT...TTTCTTCTGATG/TTTCTTCTGATG...TTTAG|ATA 0 1 43.387
61608510 GT-AG 0 0.0066529304737087 67 rna-XM_027348905.1 11132779 11 2657517 2657583 Dermatophagoides pteronyssinus 6956 ACT|GTACTTATTG...TCTAACTTATTC/TTTATTCTGATA...AATAG|ATT 0 1 48.256
61608511 GT-AG 0 0.0033400826321844 63 rna-XM_027348905.1 11132779 12 2657191 2657253 Dermatophagoides pteronyssinus 6956 TCA|GTAATTTTGA...ATTTCCTTTTTT/TTAAACCTAATC...TCAAG|CGA 2 1 54.627
61608512 GT-AG 0 1.000000099473604e-05 51 rna-XM_027348905.1 11132779 13 2657067 2657117 Dermatophagoides pteronyssinus 6956 CAG|GTAAGTGTAA...ACTTTGTTAATA/ACTTTGTTAATA...AACAG|CCT 0 1 56.395
61608513 GT-AG 0 1.000000099473604e-05 60 rna-XM_027348905.1 11132779 14 2656745 2656804 Dermatophagoides pteronyssinus 6956 AAA|GTCAGTTATT...TAACTTTTGAAT/TAACTTTTGAAT...TATAG|ATG 1 1 62.742
61608514 GT-AG 0 6.783218627216096e-05 54 rna-XM_027348905.1 11132779 15 2656561 2656614 Dermatophagoides pteronyssinus 6956 AAA|GTAAATTAGT...TGTTTCTGAATC/ATGTTTCTGAAT...GATAG|ACT 2 1 65.891
61608515 GT-AG 0 0.0008431061043475 54 rna-XM_027348905.1 11132779 16 2656441 2656494 Dermatophagoides pteronyssinus 6956 CAA|GTATGTGATG...TTTTCATTATCA/AACATTTTCATT...GTTAG|TCT 2 1 67.49
61608516 GT-AG 0 1.000000099473604e-05 56 rna-XM_027348905.1 11132779 17 2656162 2656217 Dermatophagoides pteronyssinus 6956 ATG|GTAGGTGGAT...TTGTTTTTAGTT/TTTTTAGTTATT...TCCAG|ATG 0 1 72.892
61608517 GT-AG 0 0.0086699076181166 51 rna-XM_027348905.1 11132779 18 2656029 2656079 Dermatophagoides pteronyssinus 6956 AAA|GTATAATCTA...ATGTCATTAATT/ATTAATTTAATT...TAAAG|CTA 1 1 74.879
61608518 GT-AG 0 1.000000099473604e-05 50 rna-XM_027348905.1 11132779 19 2655790 2655839 Dermatophagoides pteronyssinus 6956 CAG|GTAAGTGAAA...ATTGCCTGATTA/CACAATCTCATT...TATAG|GCG 1 1 79.457
61608519 GT-AG 0 1.000000099473604e-05 60 rna-XM_027348905.1 11132779 20 2655564 2655623 Dermatophagoides pteronyssinus 6956 AAG|GTTTTAATTT...ACTCTCTAAGCT/TCTAAGCTAATT...TTTAG|GCC 2 1 83.479
61608520 GT-AG 0 0.0014074790051324 54 rna-XM_027348905.1 11132779 21 2655455 2655508 Dermatophagoides pteronyssinus 6956 GAA|GTATGTGTAA...AATTATTTATCA/TTATTTATCATT...GACAG|ATA 0 1 84.811
61608521 GT-AG 0 0.0018307303174697 52 rna-XM_027348905.1 11132779 22 2655268 2655319 Dermatophagoides pteronyssinus 6956 TAC|GTATGTAAGA...ATTCTATTGATA/ATTCTATTGATA...TCAAG|TGT 0 1 88.081
61608522 GT-AG 0 1.000000099473604e-05 78 rna-XM_027348905.1 11132779 23 2654965 2655042 Dermatophagoides pteronyssinus 6956 CGA|GTAAGATAGA...TTTAGTTTGACT/TTTAGTTTGACT...TATAG|TCG 0 1 93.532

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 29.2ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)