introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 11132776
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608483 | GT-AG | 0 | 4.7446951408978265e-05 | 71 | rna-XM_027348419.1 11132776 | 1 | 188235 | 188305 | Dermatophagoides pteronyssinus 6956 | TCG|GTAAGTTGAT...ATTGTTTTAATA/ATTGTTTTAATA...ATTAG|ATT | 0 | 1 | 22.129 |
61608484 | GT-AG | 0 | 0.0085015261044649 | 58 | rna-XM_027348419.1 11132776 | 2 | 187256 | 187313 | Dermatophagoides pteronyssinus 6956 | CCG|GTATGTTTAT...TATTTCTAAATG/CTATTTCTAAAT...TTTAG|CTC | 0 | 1 | 43.493 |
61608485 | GT-AG | 0 | 0.0011298933391713 | 468 | rna-XM_027348419.1 11132776 | 3 | 186116 | 186583 | Dermatophagoides pteronyssinus 6956 | ATT|GTATGTACCT...AATAATTTATTT/TAATAATTTATT...ATCAG|GAC | 0 | 1 | 59.081 |
61608486 | GT-AG | 0 | 0.0001987863766866 | 62 | rna-XM_027348419.1 11132776 | 4 | 185964 | 186025 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTGTTGTA...AATATTTTGATT/TCTTTTTTTACT...AACAG|AAA | 0 | 1 | 61.169 |
61608487 | GT-AG | 0 | 0.0070335038070929 | 73 | rna-XM_027348419.1 11132776 | 5 | 185747 | 185819 | Dermatophagoides pteronyssinus 6956 | CAA|GTATGATTGA...ATTTTTTTAAAA/ATTTTTTTAAAA...CATAG|AAT | 0 | 1 | 64.509 |
61608488 | GT-AG | 0 | 1.000000099473604e-05 | 131 | rna-XM_027348419.1 11132776 | 6 | 184790 | 184920 | Dermatophagoides pteronyssinus 6956 | TAG|GTTAGTGACA...TTTCTCTTATAA/TTTTCTCTTATA...TCCAG|TCA | 1 | 1 | 83.67 |
61608489 | GT-AG | 0 | 0.0024960420638746 | 70 | rna-XM_027348419.1 11132776 | 7 | 184589 | 184658 | Dermatophagoides pteronyssinus 6956 | CGG|GTATGATTGT...GAATTTTTATCT/TTTTATCTAACT...ATCAG|ACT | 0 | 1 | 86.708 |
61608490 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-XM_027348419.1 11132776 | 8 | 184396 | 184462 | Dermatophagoides pteronyssinus 6956 | AAA|GTAAGAATTG...TTTTTTTTATTA/ATTTTTTTTATT...TGCAG|AGT | 0 | 1 | 89.631 |
61608491 | GT-AG | 0 | 0.0268250312899977 | 62 | rna-XM_027348419.1 11132776 | 9 | 183995 | 184056 | Dermatophagoides pteronyssinus 6956 | ACG|GTATGTTTTT...AAATTATTATTT/ATTATTTTTACA...ATTAG|ACA | 0 | 1 | 97.495 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);