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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 11132776

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608483 GT-AG 0 4.7446951408978265e-05 71 rna-XM_027348419.1 11132776 1 188235 188305 Dermatophagoides pteronyssinus 6956 TCG|GTAAGTTGAT...ATTGTTTTAATA/ATTGTTTTAATA...ATTAG|ATT 0 1 22.129
61608484 GT-AG 0 0.0085015261044649 58 rna-XM_027348419.1 11132776 2 187256 187313 Dermatophagoides pteronyssinus 6956 CCG|GTATGTTTAT...TATTTCTAAATG/CTATTTCTAAAT...TTTAG|CTC 0 1 43.493
61608485 GT-AG 0 0.0011298933391713 468 rna-XM_027348419.1 11132776 3 186116 186583 Dermatophagoides pteronyssinus 6956 ATT|GTATGTACCT...AATAATTTATTT/TAATAATTTATT...ATCAG|GAC 0 1 59.081
61608486 GT-AG 0 0.0001987863766866 62 rna-XM_027348419.1 11132776 4 185964 186025 Dermatophagoides pteronyssinus 6956 AAG|GTTTGTTGTA...AATATTTTGATT/TCTTTTTTTACT...AACAG|AAA 0 1 61.169
61608487 GT-AG 0 0.0070335038070929 73 rna-XM_027348419.1 11132776 5 185747 185819 Dermatophagoides pteronyssinus 6956 CAA|GTATGATTGA...ATTTTTTTAAAA/ATTTTTTTAAAA...CATAG|AAT 0 1 64.509
61608488 GT-AG 0 1.000000099473604e-05 131 rna-XM_027348419.1 11132776 6 184790 184920 Dermatophagoides pteronyssinus 6956 TAG|GTTAGTGACA...TTTCTCTTATAA/TTTTCTCTTATA...TCCAG|TCA 1 1 83.67
61608489 GT-AG 0 0.0024960420638746 70 rna-XM_027348419.1 11132776 7 184589 184658 Dermatophagoides pteronyssinus 6956 CGG|GTATGATTGT...GAATTTTTATCT/TTTTATCTAACT...ATCAG|ACT 0 1 86.708
61608490 GT-AG 0 1.000000099473604e-05 67 rna-XM_027348419.1 11132776 8 184396 184462 Dermatophagoides pteronyssinus 6956 AAA|GTAAGAATTG...TTTTTTTTATTA/ATTTTTTTTATT...TGCAG|AGT 0 1 89.631
61608491 GT-AG 0 0.0268250312899977 62 rna-XM_027348419.1 11132776 9 183995 184056 Dermatophagoides pteronyssinus 6956 ACG|GTATGTTTTT...AAATTATTATTT/ATTATTTTTACA...ATTAG|ACA 0 1 97.495

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.274ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)