introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 11132773

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Suggested facets: dinucleotide_pair, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608471 GT-AG 0 3.649813995320265e-05 61 rna-XM_027350126.1 11132773 1 2468380 2468440 Dermatophagoides pteronyssinus 6956 ATC|GTAATACCTT...TAATCTTTATTT/AAAATTCTCACT...ATTAG|AAA 1 1 1.085
61608472 TC-TA 0 0.0707048697995606 6811 rna-XM_027350126.1 11132773 2 2460143 2466953 Dermatophagoides pteronyssinus 6956 TCT|TCATGATTGG...TTTCTCTTCACT/TTTCTCTTCACT...TTTTA|GGC 2 1 32.669
61608473 GT-AG 0 0.0123875236763153 100 rna-XM_027350126.1 11132773 3 2459935 2460034 Dermatophagoides pteronyssinus 6956 CGA|GTATGTGTTT...AAAATTTTAATT/AAAATTTTAATT...CATAG|TGT 2 1 35.061
61608474 GT-AG 0 0.0001047693128007 81 rna-XM_027350126.1 11132773 4 2459767 2459847 Dermatophagoides pteronyssinus 6956 ACA|GTAAGTATTT...ACAATTTTAAAC/ACAATTTTAAAC...TTTAG|ATT 2 1 36.988
61608475 GT-AG 0 2.6150693343709976e-05 155 rna-XM_027350126.1 11132773 5 2458840 2458994 Dermatophagoides pteronyssinus 6956 AAG|GTAAATTTCA...AAATTTTTGAAA/TTTGTTTTCATC...TTTAG|GAT 0 1 54.086
61608476 GT-AG 0 0.0032128620329363 64 rna-XM_027350126.1 11132773 6 2457988 2458051 Dermatophagoides pteronyssinus 6956 TAG|GTACGCATTT...TTGTTTTTGATC/TTGTTTTTGATC...CACAG|GTG 2 1 71.539

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);