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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

22 rows where transcript_id = 11132771

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608446 GT-AG 0 0.0002563103218874 5233 rna-XM_027340509.1 11132771 1 2676591 2681823 Dermatophagoides pteronyssinus 6956 ATT|GTAAGTATCA...TTTACTTTATCC/TTTATTTTTACT...TTTAG|ATA 2 1 5.945
61608447 GT-AG 0 0.0003478705230581 1800 rna-XM_027340509.1 11132771 2 2674719 2676518 Dermatophagoides pteronyssinus 6956 TTT|GTAAGTATCT...TTTTTTTTATTT/ATTTTTTTTATT...CACAG|GCA 2 1 7.519
61608448 GT-AG 0 8.672089406404164e-05 2404 rna-XM_027340509.1 11132771 3 2672243 2674646 Dermatophagoides pteronyssinus 6956 ACT|GTAAGTAATT...TCTTTTTTAAAA/TCTTTTTTAAAA...AACAG|GTG 2 1 9.093
61608449 GT-AG 0 1.202004720354592e-05 721 rna-XM_027340509.1 11132771 4 2671450 2672170 Dermatophagoides pteronyssinus 6956 AAT|GTAAGTACAT...TTTTTCTTGTTT/TTGATTGTAATA...AATAG|CGA 2 1 10.667
61608450 GT-AG 0 0.0025818756183745 97 rna-XM_027340509.1 11132771 5 2671281 2671377 Dermatophagoides pteronyssinus 6956 CTT|GTAAGTTTTT...AATATTTTATCA/TATTTTATCATT...GTCAG|ACA 2 1 12.24
61608451 GT-AG 0 8.630663963815961e-05 60 rna-XM_027340509.1 11132771 6 2671149 2671208 Dermatophagoides pteronyssinus 6956 CCT|GTAAGTAATA...TTTGTTTTAATT/TTTGTTTTAATT...TTTAG|AAC 2 1 13.814
61608452 GT-AG 0 0.0001233141852585 85 rna-XM_027340509.1 11132771 7 2670989 2671073 Dermatophagoides pteronyssinus 6956 ATT|GTAAGTATAT...TTCGCTTTATAA/CATATTTTGAAC...TTAAG|ACA 2 1 15.454
61608453 GT-AG 0 0.0003305731524346 74 rna-XM_027340509.1 11132771 8 2670724 2670797 Dermatophagoides pteronyssinus 6956 ATT|GTAAGCATTT...TTTTTTTGGATT/ATAATTTTCACT...TATAG|GCG 1 1 19.628
61608454 GT-AG 0 1.000000099473604e-05 126 rna-XM_027340509.1 11132771 9 2670423 2670548 Dermatophagoides pteronyssinus 6956 AAT|GTAAGTGTTC...TCATTCAAAATG/ATAAAAATCATT...TGCAG|TCG 2 1 23.454
61608455 GT-AG 0 0.0037615469854879 619 rna-XM_027340509.1 11132771 10 2669732 2670350 Dermatophagoides pteronyssinus 6956 AAT|GTAAGTTTTA...TTTTTCTTATTA/TTTTTTCTTATT...AATAG|CGA 2 1 25.027
61608456 GT-AG 0 0.0003065413869291 60 rna-XM_027340509.1 11132771 11 2669600 2669659 Dermatophagoides pteronyssinus 6956 ATT|GTAGGTATCC...TTTATCATAACT/TGTTTGTTTATC...TTTAG|ATT 2 1 26.601
61608457 GT-AG 0 5.021780898289074e-05 490 rna-XM_027340509.1 11132771 12 2669038 2669527 Dermatophagoides pteronyssinus 6956 GCT|GTAAGTGTCT...GCTGATTTGATT/TTTACGCTGATT...ATCAG|TTT 2 1 28.175
61608458 GT-AG 0 0.0015548666725561 2114 rna-XM_027340509.1 11132771 13 2666852 2668965 Dermatophagoides pteronyssinus 6956 ATT|GTAAGTTTTT...TATGTTTTATAT/GTATGTTTTATA...TGCAG|ATC 2 1 29.749
61608459 GT-AG 0 1.000000099473604e-05 72 rna-XM_027340509.1 11132771 14 2666708 2666779 Dermatophagoides pteronyssinus 6956 ATT|GTGAGTAGTA...TCATTTTTAAAT/TCATTTTTAAAT...AATAG|ACA 2 1 31.322
61608460 GT-AG 0 1.866718526275448e-05 70 rna-XM_027340509.1 11132771 15 2666323 2666392 Dermatophagoides pteronyssinus 6956 ATT|GTAAGTCATT...TTCCTGTTAATA/ATAATTCTAATG...TTTAG|ACG 2 1 38.208
61608461 GT-AG 0 0.0004797588705801 98 rna-XM_027340509.1 11132771 16 2666150 2666247 Dermatophagoides pteronyssinus 6956 ACT|GTAAGTTTGT...TTCATTTTATAT/ATTGAATTCATT...CATAG|TGA 2 1 39.847
61608462 GT-AG 0 0.0018832210489669 58 rna-XM_027340509.1 11132771 17 2665948 2666005 Dermatophagoides pteronyssinus 6956 ATT|GTAAGTTTTA...CTTGTTTTGATA/CTTGTTTTGATA...AACAG|GGT 2 1 42.995
61608463 GT-AG 0 0.0001602500687851 91 rna-XM_027340509.1 11132771 18 2665785 2665875 Dermatophagoides pteronyssinus 6956 TCT|GTAAGTGTCA...TCTTTTTTAAAT/TTTAAATTCATC...AATAG|TTC 2 1 44.568
61608464 GT-AG 0 1.2395846353839e-05 61 rna-XM_027340509.1 11132771 19 2665557 2665617 Dermatophagoides pteronyssinus 6956 TTG|GTAAGTTTAT...ATGTTTTCAATT/AATGTTTTCAAT...GCTAG|GCA 1 1 48.219
61608465 GT-AG 0 1.000000099473604e-05 51 rna-XM_027340509.1 11132771 20 2664924 2664974 Dermatophagoides pteronyssinus 6956 AAA|GTAAGTCGAT...ATATTCTAAACA/TATATTCTAAAC...TATAG|ATG 1 1 60.94
61608466 GT-AG 0 1.000000099473604e-05 54 rna-XM_027340509.1 11132771 21 2663565 2663618 Dermatophagoides pteronyssinus 6956 AAG|GTTTGTCGTT...TCCTACTTAATT/ACTTAATTCATT...CGCAG|GTT 1 1 89.464
61608467 GT-AG 0 0.0004391897135983 62 rna-XM_027340509.1 11132771 22 2663269 2663330 Dermatophagoides pteronyssinus 6956 AAG|GTATTTGTGT...GATGACTTAACT/ATTGTTTTCATT...TGTAG|CAC 1 1 94.579

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
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