introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132768
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608429 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027341473.1 11132768 | 1 | 1050581 | 1050640 | Dermatophagoides pteronyssinus 6956 | AAA|GTAAGTTAAT...TATATTTCGATA/AAATCTATTATA...AACAG|GAT | 0 | 1 | 10.6 |
61608430 | GT-AG | 0 | 0.0001181761567049 | 430 | rna-XM_027341473.1 11132768 | 2 | 1052136 | 1052565 | Dermatophagoides pteronyssinus 6956 | AAA|GTAAGTTACC...TTTTTTTTAATC/TTTTTTTTAATC...CACAG|GAA | 1 | 1 | 42.422 |
61608431 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027341473.1 11132768 | 3 | 1052635 | 1052693 | Dermatophagoides pteronyssinus 6956 | GAG|GTAATGGTCA...AGAACATTAAAA/CTAAATTTTATG...TGTAG|ATT | 1 | 1 | 43.891 |
61608432 | GT-AG | 0 | 0.0395757257789742 | 120 | rna-XM_027341473.1 11132768 | 4 | 1052848 | 1052967 | Dermatophagoides pteronyssinus 6956 | CGG|GTATTTTTTT...ATTTATTTATTT/AATTTATTTATT...TTTAG|CAA | 2 | 1 | 47.169 |
61608433 | GT-AG | 0 | 0.0154763158490564 | 61 | rna-XM_027341473.1 11132768 | 5 | 1053086 | 1053146 | Dermatophagoides pteronyssinus 6956 | AAG|GTATTATTTA...CGATTCTTAATT/GTACTTTTGATT...GACAG|ATT | 0 | 1 | 49.681 |
61608434 | GT-AG | 0 | 0.0005428556957352 | 63 | rna-XM_027341473.1 11132768 | 6 | 1054958 | 1055020 | Dermatophagoides pteronyssinus 6956 | TTA|GTAAGTTTTT...TTATTGTTGATG/TCTGGTTTCACT...TATAG|CTA | 2 | 1 | 88.229 |
61608435 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-XM_027341473.1 11132768 | 7 | 1055184 | 1055249 | Dermatophagoides pteronyssinus 6956 | AGG|GTAAGTGATC...CATTTCTGATCC/TCATTTCTGATC...ATTAG|GTT | 0 | 1 | 91.699 |
61608436 | GT-AG | 0 | 1.000000099473604e-05 | 266 | rna-XM_027341473.1 11132768 | 8 | 1055394 | 1055659 | Dermatophagoides pteronyssinus 6956 | ACG|GTAAATGAAT...TCTTCTCTATCA/ACCAAATTAATC...GACAG|TTT | 0 | 1 | 94.764 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);