home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11132768

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608429 GT-AG 0 1.000000099473604e-05 60 rna-XM_027341473.1 11132768 1 1050581 1050640 Dermatophagoides pteronyssinus 6956 AAA|GTAAGTTAAT...TATATTTCGATA/AAATCTATTATA...AACAG|GAT 0 1 10.6
61608430 GT-AG 0 0.0001181761567049 430 rna-XM_027341473.1 11132768 2 1052136 1052565 Dermatophagoides pteronyssinus 6956 AAA|GTAAGTTACC...TTTTTTTTAATC/TTTTTTTTAATC...CACAG|GAA 1 1 42.422
61608431 GT-AG 0 1.000000099473604e-05 59 rna-XM_027341473.1 11132768 3 1052635 1052693 Dermatophagoides pteronyssinus 6956 GAG|GTAATGGTCA...AGAACATTAAAA/CTAAATTTTATG...TGTAG|ATT 1 1 43.891
61608432 GT-AG 0 0.0395757257789742 120 rna-XM_027341473.1 11132768 4 1052848 1052967 Dermatophagoides pteronyssinus 6956 CGG|GTATTTTTTT...ATTTATTTATTT/AATTTATTTATT...TTTAG|CAA 2 1 47.169
61608433 GT-AG 0 0.0154763158490564 61 rna-XM_027341473.1 11132768 5 1053086 1053146 Dermatophagoides pteronyssinus 6956 AAG|GTATTATTTA...CGATTCTTAATT/GTACTTTTGATT...GACAG|ATT 0 1 49.681
61608434 GT-AG 0 0.0005428556957352 63 rna-XM_027341473.1 11132768 6 1054958 1055020 Dermatophagoides pteronyssinus 6956 TTA|GTAAGTTTTT...TTATTGTTGATG/TCTGGTTTCACT...TATAG|CTA 2 1 88.229
61608435 GT-AG 0 1.000000099473604e-05 66 rna-XM_027341473.1 11132768 7 1055184 1055249 Dermatophagoides pteronyssinus 6956 AGG|GTAAGTGATC...CATTTCTGATCC/TCATTTCTGATC...ATTAG|GTT 0 1 91.699
61608436 GT-AG 0 1.000000099473604e-05 266 rna-XM_027341473.1 11132768 8 1055394 1055659 Dermatophagoides pteronyssinus 6956 ACG|GTAAATGAAT...TCTTCTCTATCA/ACCAAATTAATC...GACAG|TTT 0 1 94.764

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.594ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)