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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

17 rows where transcript_id = 11132767

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608412 GT-AG 0 6.193103134384016e-05 65 rna-XM_027348966.1 11132767 1 455865 455929 Dermatophagoides pteronyssinus 6956 CCG|GTAAATTATT...ATAATTTTATTT/AATAATTTTATT...ATAAG|GGT 0 1 0.816
61608413 GT-AG 0 1.000000099473604e-05 59 rna-XM_027348966.1 11132767 2 457370 457428 Dermatophagoides pteronyssinus 6956 CGG|GTAAGAAACT...CGGATCTTATTT/ATCTTATTTATT...TCCAG|GGT 0 1 30.928
61608414 GT-AG 0 0.0006656758236961 59 rna-XM_027348966.1 11132767 3 457606 457664 Dermatophagoides pteronyssinus 6956 AAA|GTATGTAATT...AATTATTTATCA/GAATTATTTATC...AATAG|GGC 0 1 34.63
61608415 GT-AG 0 0.0001855651404916 56 rna-XM_027348966.1 11132767 4 457861 457916 Dermatophagoides pteronyssinus 6956 CAG|GTATAATCAA...CATGTCTTGAAT/TCATTATTTATA...CATAG|GAA 1 1 38.729
61608416 GT-AG 0 1.423792647772794e-05 65 rna-XM_027348966.1 11132767 5 458034 458098 Dermatophagoides pteronyssinus 6956 ATG|GTAAACAAAA...TTTTTTTCGACA/AAAATATTTAAA...AAAAG|GAT 1 1 41.175
61608417 GT-AG 0 0.0138012783825909 66 rna-XM_027348966.1 11132767 6 458279 458344 Dermatophagoides pteronyssinus 6956 CGG|GTATGCTATT...CTATTATTATCA/TCTATTATTATC...AACAG|GAC 1 1 44.939
61608418 GT-AG 0 1.000000099473604e-05 58 rna-XM_027348966.1 11132767 7 458395 458452 Dermatophagoides pteronyssinus 6956 CCT|GTAAGTAAAA...TGTTGTTTAACG/AAATTATTCAAT...CTTAG|GGT 0 1 45.985
61608419 GT-AG 0 1.000000099473604e-05 60 rna-XM_027348966.1 11132767 8 458540 458599 Dermatophagoides pteronyssinus 6956 ATT|GTTAGTATAC...GGGTTTTTTTCG/ATGATAATTATT...GTTAG|ATG 0 1 47.804
61608420 GT-AG 0 1.000000099473604e-05 65 rna-XM_027348966.1 11132767 9 458829 458893 Dermatophagoides pteronyssinus 6956 CTG|GTGAGATTGA...TGATTCCTAATA/TGATTCCTAATA...TTAAG|GTC 1 1 52.593
61608421 GT-AG 0 1.000000099473604e-05 59 rna-XM_027348966.1 11132767 10 458975 459033 Dermatophagoides pteronyssinus 6956 AAG|GTTTGAATTT...GATTACTTACTG/CGATTACTTACT...TTCAG|GAG 1 1 54.287
61608422 GT-AG 0 1.000000099473604e-05 61 rna-XM_027348966.1 11132767 11 459175 459235 Dermatophagoides pteronyssinus 6956 AAG|GTAAATAAAA...TTATTTTCAACT/ATTATTTTCAAC...TTCAG|GTG 1 1 57.235
61608423 GT-AG 0 1.418686954896314e-05 56 rna-XM_027348966.1 11132767 12 459541 459596 Dermatophagoides pteronyssinus 6956 AAG|GTAAACAACT...TTTTTTTTATAG/TTTTTCTTCATC...AAAAG|GGT 0 1 63.614
61608424 GT-AG 0 1.2382610671340116e-05 104 rna-XM_027348966.1 11132767 13 459868 459971 Dermatophagoides pteronyssinus 6956 GTG|GTTTGAATGG...TTTTTTTTGATA/TTTTTTTTGATA...TACAG|GAT 1 1 69.281
61608425 GT-AG 0 1.000000099473604e-05 55 rna-XM_027348966.1 11132767 14 460077 460131 Dermatophagoides pteronyssinus 6956 AAG|GTGGAATCCA...ATTATTTTGACT/ATTATTTTGACT...TTCAG|TTG 1 1 71.476
61608426 GT-AG 0 5.933047588355397e-05 61 rna-XM_027348966.1 11132767 15 460210 460270 Dermatophagoides pteronyssinus 6956 AAG|GTTTGTCTTA...TTGATTTTATCA/AAAATTTTGATT...ATCAG|GAG 1 1 73.107
61608427 GT-AG 0 1.000000099473604e-05 60 rna-XM_027348966.1 11132767 16 460778 460837 Dermatophagoides pteronyssinus 6956 AAG|GTTGGTAATT...TTTGTTTCGAAA/TAAAAACTCAAA...TCTAG|GTG 1 1 83.71
61608428 GT-AG 0 4.6184727667336194e-05 69 rna-XM_027348966.1 11132767 17 461362 461430 Dermatophagoides pteronyssinus 6956 ATG|GTAATTTATA...CGACTTTTATCA/ACAAATTTAATT...AATAG|CAT 0 1 94.668

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.073ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)