introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
17 rows where transcript_id = 11132767
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608412 | GT-AG | 0 | 6.193103134384016e-05 | 65 | rna-XM_027348966.1 11132767 | 1 | 455865 | 455929 | Dermatophagoides pteronyssinus 6956 | CCG|GTAAATTATT...ATAATTTTATTT/AATAATTTTATT...ATAAG|GGT | 0 | 1 | 0.816 |
61608413 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027348966.1 11132767 | 2 | 457370 | 457428 | Dermatophagoides pteronyssinus 6956 | CGG|GTAAGAAACT...CGGATCTTATTT/ATCTTATTTATT...TCCAG|GGT | 0 | 1 | 30.928 |
61608414 | GT-AG | 0 | 0.0006656758236961 | 59 | rna-XM_027348966.1 11132767 | 3 | 457606 | 457664 | Dermatophagoides pteronyssinus 6956 | AAA|GTATGTAATT...AATTATTTATCA/GAATTATTTATC...AATAG|GGC | 0 | 1 | 34.63 |
61608415 | GT-AG | 0 | 0.0001855651404916 | 56 | rna-XM_027348966.1 11132767 | 4 | 457861 | 457916 | Dermatophagoides pteronyssinus 6956 | CAG|GTATAATCAA...CATGTCTTGAAT/TCATTATTTATA...CATAG|GAA | 1 | 1 | 38.729 |
61608416 | GT-AG | 0 | 1.423792647772794e-05 | 65 | rna-XM_027348966.1 11132767 | 5 | 458034 | 458098 | Dermatophagoides pteronyssinus 6956 | ATG|GTAAACAAAA...TTTTTTTCGACA/AAAATATTTAAA...AAAAG|GAT | 1 | 1 | 41.175 |
61608417 | GT-AG | 0 | 0.0138012783825909 | 66 | rna-XM_027348966.1 11132767 | 6 | 458279 | 458344 | Dermatophagoides pteronyssinus 6956 | CGG|GTATGCTATT...CTATTATTATCA/TCTATTATTATC...AACAG|GAC | 1 | 1 | 44.939 |
61608418 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-XM_027348966.1 11132767 | 7 | 458395 | 458452 | Dermatophagoides pteronyssinus 6956 | CCT|GTAAGTAAAA...TGTTGTTTAACG/AAATTATTCAAT...CTTAG|GGT | 0 | 1 | 45.985 |
61608419 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027348966.1 11132767 | 8 | 458540 | 458599 | Dermatophagoides pteronyssinus 6956 | ATT|GTTAGTATAC...GGGTTTTTTTCG/ATGATAATTATT...GTTAG|ATG | 0 | 1 | 47.804 |
61608420 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-XM_027348966.1 11132767 | 9 | 458829 | 458893 | Dermatophagoides pteronyssinus 6956 | CTG|GTGAGATTGA...TGATTCCTAATA/TGATTCCTAATA...TTAAG|GTC | 1 | 1 | 52.593 |
61608421 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027348966.1 11132767 | 10 | 458975 | 459033 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTGAATTT...GATTACTTACTG/CGATTACTTACT...TTCAG|GAG | 1 | 1 | 54.287 |
61608422 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-XM_027348966.1 11132767 | 11 | 459175 | 459235 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAATAAAA...TTATTTTCAACT/ATTATTTTCAAC...TTCAG|GTG | 1 | 1 | 57.235 |
61608423 | GT-AG | 0 | 1.418686954896314e-05 | 56 | rna-XM_027348966.1 11132767 | 12 | 459541 | 459596 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAACAACT...TTTTTTTTATAG/TTTTTCTTCATC...AAAAG|GGT | 0 | 1 | 63.614 |
61608424 | GT-AG | 0 | 1.2382610671340116e-05 | 104 | rna-XM_027348966.1 11132767 | 13 | 459868 | 459971 | Dermatophagoides pteronyssinus 6956 | GTG|GTTTGAATGG...TTTTTTTTGATA/TTTTTTTTGATA...TACAG|GAT | 1 | 1 | 69.281 |
61608425 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027348966.1 11132767 | 14 | 460077 | 460131 | Dermatophagoides pteronyssinus 6956 | AAG|GTGGAATCCA...ATTATTTTGACT/ATTATTTTGACT...TTCAG|TTG | 1 | 1 | 71.476 |
61608426 | GT-AG | 0 | 5.933047588355397e-05 | 61 | rna-XM_027348966.1 11132767 | 15 | 460210 | 460270 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTGTCTTA...TTGATTTTATCA/AAAATTTTGATT...ATCAG|GAG | 1 | 1 | 73.107 |
61608427 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027348966.1 11132767 | 16 | 460778 | 460837 | Dermatophagoides pteronyssinus 6956 | AAG|GTTGGTAATT...TTTGTTTCGAAA/TAAAAACTCAAA...TCTAG|GTG | 1 | 1 | 83.71 |
61608428 | GT-AG | 0 | 4.6184727667336194e-05 | 69 | rna-XM_027348966.1 11132767 | 17 | 461362 | 461430 | Dermatophagoides pteronyssinus 6956 | ATG|GTAATTTATA...CGACTTTTATCA/ACAAATTTAATT...AATAG|CAT | 0 | 1 | 94.668 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);