introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 11132764
This data as json, CSV (advanced)
Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608399 | GT-AG | 0 | 1.5610326103857383e-05 | 65 | rna-XM_027350097.1 11132764 | 1 | 2423807 | 2423871 | Dermatophagoides pteronyssinus 6956 | CAG|GTATAGCCCA...TTATTCTCGAAT/ATCTATATCATT...GTTAG|GAA | 0 | 1 | 16.169 |
61608400 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-XM_027350097.1 11132764 | 2 | 2424003 | 2424064 | Dermatophagoides pteronyssinus 6956 | AAT|GTAAGTGAAT...TATTTTTTGATT/TATTTTTTGATT...ATCAG|TTG | 2 | 1 | 18.775 |
61608401 | GT-AG | 0 | 8.206920365114557e-05 | 648 | rna-XM_027350097.1 11132764 | 3 | 2424250 | 2424897 | Dermatophagoides pteronyssinus 6956 | AAC|GTAAGTATCA...TTATTCTTATAA/TTTTATCTAATT...TTAAG|CTT | 1 | 1 | 22.454 |
61608402 | GT-AG | 0 | 1.000000099473604e-05 | 193 | rna-XM_027350097.1 11132764 | 4 | 2426107 | 2426299 | Dermatophagoides pteronyssinus 6956 | CGG|GTAAGTCGAA...TCTTTCTTATTA/TTCTTTCTTATT...CAAAG|GTC | 1 | 1 | 46.5 |
61608403 | GT-AG | 0 | 0.0177946503990018 | 115 | rna-XM_027350097.1 11132764 | 5 | 2426486 | 2426600 | Dermatophagoides pteronyssinus 6956 | GAG|GTATTTTCAT...GATTCTTTAAAT/TAATAATTAATT...ATAAG|GTC | 1 | 1 | 50.199 |
61608404 | GT-AG | 0 | 0.0001441249651356 | 66 | rna-XM_027350097.1 11132764 | 6 | 2428851 | 2428916 | Dermatophagoides pteronyssinus 6956 | TAA|GTAAGTTTTC...TAAACTTTTTCA/AACTTTTTCAAA...CACAG|ATT | 1 | 1 | 94.948 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);