introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 11132762
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608387 | GT-AG | 0 | 2.7732077675522303e-05 | 64 | rna-XM_027345957.1 11132762 | 1 | 2606950 | 2607013 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTGGTTTT...AATCCATTAACC/CCAATCTTTACT...CGCAG|AAC | 2 | 1 | 15.994 |
61608388 | GT-AG | 0 | 7.726749215466483e-05 | 84 | rna-XM_027345957.1 11132762 | 2 | 2607246 | 2607329 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAGTTTGA...AATCTCTTGATT/TTTTTTGTCAAT...TATAG|AAT | 0 | 1 | 20.581 |
61608389 | GT-AG | 0 | 1.000000099473604e-05 | 597 | rna-XM_027345957.1 11132762 | 3 | 2610085 | 2610681 | Dermatophagoides pteronyssinus 6956 | CAG|GTTAGTTTAA...ATTTCCTTTCTA/TCCTTTCTAATT...TGTAG|ATG | 1 | 1 | 75.049 |
61608390 | GT-AG | 0 | 0.0009013114306603 | 190 | rna-XM_027345957.1 11132762 | 4 | 2610905 | 2611094 | Dermatophagoides pteronyssinus 6956 | TTA|GTAAGTTCCT...TGTCCTTTATCT/TTGTCCTTTATC...TAAAG|CAT | 2 | 1 | 79.458 |
61608391 | GT-AG | 0 | 0.0002592676411471 | 684 | rna-XM_027345957.1 11132762 | 5 | 2611465 | 2612148 | Dermatophagoides pteronyssinus 6956 | GAG|GTTTGTTTGA...CAATTTTTATTC/ACAATTTTTATT...TTCAG|CCT | 0 | 1 | 86.773 |
61608392 | GT-AG | 0 | 0.0002020802781749 | 70 | rna-XM_027345957.1 11132762 | 6 | 2612523 | 2612592 | Dermatophagoides pteronyssinus 6956 | CAT|GTAAGTTATA...TGTTTTTTATTT/GTGTTTTTTATT...AACAG|TGG | 2 | 1 | 94.168 |
61608393 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-XM_027345957.1 11132762 | 7 | 2612725 | 2612781 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAGTAAAC...ATGTTTTTAGTA/AATGTTTTTAGT...TACAG|TCA | 2 | 1 | 96.777 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);