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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 11132762

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608387 GT-AG 0 2.7732077675522303e-05 64 rna-XM_027345957.1 11132762 1 2606950 2607013 Dermatophagoides pteronyssinus 6956 AAG|GTTTGGTTTT...AATCCATTAACC/CCAATCTTTACT...CGCAG|AAC 2 1 15.994
61608388 GT-AG 0 7.726749215466483e-05 84 rna-XM_027345957.1 11132762 2 2607246 2607329 Dermatophagoides pteronyssinus 6956 AAG|GTAAGTTTGA...AATCTCTTGATT/TTTTTTGTCAAT...TATAG|AAT 0 1 20.581
61608389 GT-AG 0 1.000000099473604e-05 597 rna-XM_027345957.1 11132762 3 2610085 2610681 Dermatophagoides pteronyssinus 6956 CAG|GTTAGTTTAA...ATTTCCTTTCTA/TCCTTTCTAATT...TGTAG|ATG 1 1 75.049
61608390 GT-AG 0 0.0009013114306603 190 rna-XM_027345957.1 11132762 4 2610905 2611094 Dermatophagoides pteronyssinus 6956 TTA|GTAAGTTCCT...TGTCCTTTATCT/TTGTCCTTTATC...TAAAG|CAT 2 1 79.458
61608391 GT-AG 0 0.0002592676411471 684 rna-XM_027345957.1 11132762 5 2611465 2612148 Dermatophagoides pteronyssinus 6956 GAG|GTTTGTTTGA...CAATTTTTATTC/ACAATTTTTATT...TTCAG|CCT 0 1 86.773
61608392 GT-AG 0 0.0002020802781749 70 rna-XM_027345957.1 11132762 6 2612523 2612592 Dermatophagoides pteronyssinus 6956 CAT|GTAAGTTATA...TGTTTTTTATTT/GTGTTTTTTATT...AACAG|TGG 2 1 94.168
61608393 GT-AG 0 1.000000099473604e-05 57 rna-XM_027345957.1 11132762 7 2612725 2612781 Dermatophagoides pteronyssinus 6956 AAG|GTAAGTAAAC...ATGTTTTTAGTA/AATGTTTTTAGT...TACAG|TCA 2 1 96.777

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.009ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)