introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 11132761
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608379 | GT-AG | 0 | 1.000000099473604e-05 | 1860 | rna-XM_027350085.1 11132761 | 1 | 2164158 | 2166017 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAGTAATA...CTATTTTTATCT/TCTATTTTTATC...TGTAG|CTA | 1 | 1 | 13.361 |
61608380 | GT-AG | 0 | 0.0002991132897683 | 1149 | rna-XM_027350085.1 11132761 | 2 | 2166627 | 2167775 | Dermatophagoides pteronyssinus 6956 | TAG|GTATAATAAT...TCTTTTTTATTT/GTCTTTTTTATT...TTAAG|GAT | 1 | 1 | 25.239 |
61608381 | GT-AG | 0 | 0.0139293820532148 | 70 | rna-XM_027350085.1 11132761 | 3 | 2168081 | 2168150 | Dermatophagoides pteronyssinus 6956 | AAG|GTATATTTAT...TTGATTTTAAAT/TTGATTTTAAAT...TCTAG|AAA | 0 | 1 | 31.188 |
61608382 | GT-AG | 0 | 0.0018428469585901 | 98 | rna-XM_027350085.1 11132761 | 4 | 2168733 | 2168830 | Dermatophagoides pteronyssinus 6956 | CAG|GTATGTTTGT...AACATTTTATTT/AAAGTTTTCATT...TTCAG|GCT | 0 | 1 | 42.539 |
61608383 | GT-AG | 0 | 1.000000099473604e-05 | 748 | rna-XM_027350085.1 11132761 | 5 | 2169415 | 2170162 | Dermatophagoides pteronyssinus 6956 | CGG|GTAAGTGTGA...TAATTATTAATT/TAATTATTAATT...TATAG|GAA | 2 | 1 | 53.93 |
61608384 | GT-AG | 0 | 1.2312405090418016e-05 | 4373 | rna-XM_027350085.1 11132761 | 6 | 2170453 | 2174825 | Dermatophagoides pteronyssinus 6956 | TTG|GTAAGCATAA...TCTTTTTTATAC/TTCTTTTTTATA...TTTAG|GAC | 1 | 1 | 59.587 |
61608385 | GT-AG | 0 | 8.426270652631269e-05 | 2722 | rna-XM_027350085.1 11132761 | 7 | 2175500 | 2178221 | Dermatophagoides pteronyssinus 6956 | TCG|GTAAGTTTTT...ATAATCATAATG/ATTATAATCATA...ACAAG|GAA | 0 | 1 | 72.733 |
61608386 | GT-AG | 0 | 1.000000099473604e-05 | 715 | rna-XM_027350085.1 11132761 | 8 | 2178843 | 2179557 | Dermatophagoides pteronyssinus 6956 | AAG|GTAGAAAAAA...AGATTTTTAATC/ATATTATTCATT...TACAG|TTA | 0 | 1 | 84.845 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);