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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 11132761

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608379 GT-AG 0 1.000000099473604e-05 1860 rna-XM_027350085.1 11132761 1 2164158 2166017 Dermatophagoides pteronyssinus 6956 AAG|GTAAGTAATA...CTATTTTTATCT/TCTATTTTTATC...TGTAG|CTA 1 1 13.361
61608380 GT-AG 0 0.0002991132897683 1149 rna-XM_027350085.1 11132761 2 2166627 2167775 Dermatophagoides pteronyssinus 6956 TAG|GTATAATAAT...TCTTTTTTATTT/GTCTTTTTTATT...TTAAG|GAT 1 1 25.239
61608381 GT-AG 0 0.0139293820532148 70 rna-XM_027350085.1 11132761 3 2168081 2168150 Dermatophagoides pteronyssinus 6956 AAG|GTATATTTAT...TTGATTTTAAAT/TTGATTTTAAAT...TCTAG|AAA 0 1 31.188
61608382 GT-AG 0 0.0018428469585901 98 rna-XM_027350085.1 11132761 4 2168733 2168830 Dermatophagoides pteronyssinus 6956 CAG|GTATGTTTGT...AACATTTTATTT/AAAGTTTTCATT...TTCAG|GCT 0 1 42.539
61608383 GT-AG 0 1.000000099473604e-05 748 rna-XM_027350085.1 11132761 5 2169415 2170162 Dermatophagoides pteronyssinus 6956 CGG|GTAAGTGTGA...TAATTATTAATT/TAATTATTAATT...TATAG|GAA 2 1 53.93
61608384 GT-AG 0 1.2312405090418016e-05 4373 rna-XM_027350085.1 11132761 6 2170453 2174825 Dermatophagoides pteronyssinus 6956 TTG|GTAAGCATAA...TCTTTTTTATAC/TTCTTTTTTATA...TTTAG|GAC 1 1 59.587
61608385 GT-AG 0 8.426270652631269e-05 2722 rna-XM_027350085.1 11132761 7 2175500 2178221 Dermatophagoides pteronyssinus 6956 TCG|GTAAGTTTTT...ATAATCATAATG/ATTATAATCATA...ACAAG|GAA 0 1 72.733
61608386 GT-AG 0 1.000000099473604e-05 715 rna-XM_027350085.1 11132761 8 2178843 2179557 Dermatophagoides pteronyssinus 6956 AAG|GTAGAAAAAA...AGATTTTTAATC/ATATTATTCATT...TACAG|TTA 0 1 84.845

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 29.602ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)