introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 11132758
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608347 | GT-AG | 0 | 5.052366718558235e-05 | 2592 | rna-XM_027348324.1 11132758 | 1 | 1026274 | 1028865 | Dermatophagoides pteronyssinus 6956 | TTA|GTAAGTCAAT...ACATTTTTAACT/ACATTTTTAACT...ATCAG|TGA | 2 | 1 | 3.05 |
61608348 | GT-AG | 0 | 0.0005818910987791 | 1210 | rna-XM_027348324.1 11132758 | 2 | 1024416 | 1025625 | Dermatophagoides pteronyssinus 6956 | TCG|GTAAGTTTTA...TTTTTCTTCATT/TTTTTCTTCATT...AAAAG|AAA | 2 | 1 | 15.557 |
61608349 | GT-AG | 0 | 1.000000099473604e-05 | 488 | rna-XM_027348324.1 11132758 | 3 | 1023277 | 1023764 | Dermatophagoides pteronyssinus 6956 | AAG|GTAAATGTCA...TTAATTTTACTT/TTTAATTTTACT...TTTAG|ATA | 2 | 1 | 28.122 |
61608350 | GT-AG | 0 | 0.0004045495767109 | 80 | rna-XM_027348324.1 11132758 | 4 | 1022787 | 1022866 | Dermatophagoides pteronyssinus 6956 | AAT|GTATGATAAA...CTCTTGTTGATT/CTCTTGTTGATT...TTTAG|CTC | 1 | 1 | 36.036 |
61608351 | GT-AG | 0 | 1.000000099473604e-05 | 464 | rna-XM_027348324.1 11132758 | 5 | 1021268 | 1021731 | Dermatophagoides pteronyssinus 6956 | GTG|GTAAGTTGTT...TTGGCTTTGTTG/GTTGTTGTCATG...TTTAG|CTA | 0 | 1 | 56.398 |
61608352 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-XM_027348324.1 11132758 | 6 | 1020566 | 1020626 | Dermatophagoides pteronyssinus 6956 | AAA|GTAGGTGACA...TGTTTTTTTTCT/TGATGATTAATT...TTCAG|ATT | 2 | 1 | 68.771 |
61608353 | GT-AG | 0 | 0.0002189436311542 | 70 | rna-XM_027348324.1 11132758 | 7 | 1020074 | 1020143 | Dermatophagoides pteronyssinus 6956 | CAG|GTAATTTTTT...ATATCATTAATA/ATTAATTTAATT...TTCAG|CTA | 1 | 1 | 76.916 |
61608354 | GT-AG | 0 | 5.960035755512559e-05 | 60 | rna-XM_027348324.1 11132758 | 8 | 1019724 | 1019783 | Dermatophagoides pteronyssinus 6956 | CAG|GTTTGATTTA...TAACTTTTAATT/CAATTTTTTATT...TTTAG|ATG | 0 | 1 | 82.513 |
61608355 | GT-AG | 0 | 0.0006964705965852 | 387 | rna-XM_027348324.1 11132758 | 9 | 1019098 | 1019484 | Dermatophagoides pteronyssinus 6956 | TCA|GTAAATGTTT...AGATTTTTGATT/AGATTTTTGATT...CATAG|TAA | 2 | 1 | 87.126 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);