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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 11132758

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608347 GT-AG 0 5.052366718558235e-05 2592 rna-XM_027348324.1 11132758 1 1026274 1028865 Dermatophagoides pteronyssinus 6956 TTA|GTAAGTCAAT...ACATTTTTAACT/ACATTTTTAACT...ATCAG|TGA 2 1 3.05
61608348 GT-AG 0 0.0005818910987791 1210 rna-XM_027348324.1 11132758 2 1024416 1025625 Dermatophagoides pteronyssinus 6956 TCG|GTAAGTTTTA...TTTTTCTTCATT/TTTTTCTTCATT...AAAAG|AAA 2 1 15.557
61608349 GT-AG 0 1.000000099473604e-05 488 rna-XM_027348324.1 11132758 3 1023277 1023764 Dermatophagoides pteronyssinus 6956 AAG|GTAAATGTCA...TTAATTTTACTT/TTTAATTTTACT...TTTAG|ATA 2 1 28.122
61608350 GT-AG 0 0.0004045495767109 80 rna-XM_027348324.1 11132758 4 1022787 1022866 Dermatophagoides pteronyssinus 6956 AAT|GTATGATAAA...CTCTTGTTGATT/CTCTTGTTGATT...TTTAG|CTC 1 1 36.036
61608351 GT-AG 0 1.000000099473604e-05 464 rna-XM_027348324.1 11132758 5 1021268 1021731 Dermatophagoides pteronyssinus 6956 GTG|GTAAGTTGTT...TTGGCTTTGTTG/GTTGTTGTCATG...TTTAG|CTA 0 1 56.398
61608352 GT-AG 0 1.000000099473604e-05 61 rna-XM_027348324.1 11132758 6 1020566 1020626 Dermatophagoides pteronyssinus 6956 AAA|GTAGGTGACA...TGTTTTTTTTCT/TGATGATTAATT...TTCAG|ATT 2 1 68.771
61608353 GT-AG 0 0.0002189436311542 70 rna-XM_027348324.1 11132758 7 1020074 1020143 Dermatophagoides pteronyssinus 6956 CAG|GTAATTTTTT...ATATCATTAATA/ATTAATTTAATT...TTCAG|CTA 1 1 76.916
61608354 GT-AG 0 5.960035755512559e-05 60 rna-XM_027348324.1 11132758 8 1019724 1019783 Dermatophagoides pteronyssinus 6956 CAG|GTTTGATTTA...TAACTTTTAATT/CAATTTTTTATT...TTTAG|ATG 0 1 82.513
61608355 GT-AG 0 0.0006964705965852 387 rna-XM_027348324.1 11132758 9 1019098 1019484 Dermatophagoides pteronyssinus 6956 TCA|GTAAATGTTT...AGATTTTTGATT/AGATTTTTGATT...CATAG|TAA 2 1 87.126

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.001ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)