introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 11132756
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61608309 | GT-AG | 0 | 0.0002585957065678 | 820 | rna-XM_027338625.1 11132756 | 1 | 2976794 | 2977613 | Dermatophagoides pteronyssinus 6956 | AAG|GTATTTCAAA...TCTTTTTTATAA/TTCTTTTTTATA...GATAG|CCT | 2 | 1 | 1.993 |
61608310 | GT-AG | 0 | 8.805685849549667e-05 | 102 | rna-XM_027338625.1 11132756 | 2 | 2976608 | 2976709 | Dermatophagoides pteronyssinus 6956 | TAA|GTAAGTTACC...CTAATCTTAAAT/AATTTTATCACT...TATAG|AGA | 2 | 1 | 3.514 |
61608311 | GT-AG | 0 | 0.0014872341114344 | 105 | rna-XM_027338625.1 11132756 | 3 | 2976280 | 2976384 | Dermatophagoides pteronyssinus 6956 | AAG|GTTTTTTTTT...CAATTTTTATTT/TTTAATTTAATT...CGCAG|AAC | 0 | 1 | 7.554 |
61608312 | GT-AG | 0 | 1.000000099473604e-05 | 150 | rna-XM_027338625.1 11132756 | 4 | 2975794 | 2975943 | Dermatophagoides pteronyssinus 6956 | CTG|GTAATGGCAT...TGTCTCTTACTT/GATTTTTTCATC...GTCAG|ACG | 0 | 1 | 13.641 |
61608313 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027338625.1 11132756 | 5 | 2975561 | 2975615 | Dermatophagoides pteronyssinus 6956 | GAG|GTTAGCTAAT...ATAATTATAATG/ATGATGATAATT...TCTAG|AAC | 1 | 1 | 16.866 |
61608314 | GT-AG | 0 | 1.1114597600833257e-05 | 69 | rna-XM_027338625.1 11132756 | 6 | 2974226 | 2974294 | Dermatophagoides pteronyssinus 6956 | ATG|GTAATTATCT...TTTTTTTTTGCA/CAAATAATTATA...TATAG|AAA | 1 | 1 | 39.801 |
61608315 | GT-AG | 0 | 0.0035477492099139 | 70 | rna-XM_027338625.1 11132756 | 7 | 2973707 | 2973776 | Dermatophagoides pteronyssinus 6956 | CAG|GTATGTATGC...ATGCCCTTATCG/TTAAATTTGATT...TTTAG|CAA | 0 | 1 | 47.935 |
61608316 | GT-AG | 0 | 1.000000099473604e-05 | 95 | rna-XM_027338625.1 11132756 | 8 | 2972532 | 2972626 | Dermatophagoides pteronyssinus 6956 | ATG|GTTCGTTTAG...TTATTATTATTT/ATTCTTTTCATT...AACAG|GAT | 0 | 1 | 67.5 |
61608317 | GT-AG | 0 | 0.0676299019388639 | 64 | rna-XM_027338625.1 11132756 | 9 | 2972114 | 2972177 | Dermatophagoides pteronyssinus 6956 | GAT|GTAAACTTTT...TACCTTTTAACT/TTTTAACTTAAT...TTCAG|GCT | 0 | 1 | 73.913 |
61608318 | GT-AG | 0 | 0.001549730832728 | 75 | rna-XM_027338625.1 11132756 | 10 | 2971709 | 2971783 | Dermatophagoides pteronyssinus 6956 | AAT|GTAAGTTTTT...CTAATCTTATTA/ACTAATCTTATT...AACAG|AGA | 0 | 1 | 79.891 |
61608319 | GT-AG | 0 | 6.432522243665966e-05 | 67 | rna-XM_027338625.1 11132756 | 11 | 2971504 | 2971570 | Dermatophagoides pteronyssinus 6956 | ACG|GTTTGTTAAT...CATTCATTAATA/ATTATTTTCATT...AACAG|GAT | 0 | 1 | 82.391 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);