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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 11132756

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
61608309 GT-AG 0 0.0002585957065678 820 rna-XM_027338625.1 11132756 1 2976794 2977613 Dermatophagoides pteronyssinus 6956 AAG|GTATTTCAAA...TCTTTTTTATAA/TTCTTTTTTATA...GATAG|CCT 2 1 1.993
61608310 GT-AG 0 8.805685849549667e-05 102 rna-XM_027338625.1 11132756 2 2976608 2976709 Dermatophagoides pteronyssinus 6956 TAA|GTAAGTTACC...CTAATCTTAAAT/AATTTTATCACT...TATAG|AGA 2 1 3.514
61608311 GT-AG 0 0.0014872341114344 105 rna-XM_027338625.1 11132756 3 2976280 2976384 Dermatophagoides pteronyssinus 6956 AAG|GTTTTTTTTT...CAATTTTTATTT/TTTAATTTAATT...CGCAG|AAC 0 1 7.554
61608312 GT-AG 0 1.000000099473604e-05 150 rna-XM_027338625.1 11132756 4 2975794 2975943 Dermatophagoides pteronyssinus 6956 CTG|GTAATGGCAT...TGTCTCTTACTT/GATTTTTTCATC...GTCAG|ACG 0 1 13.641
61608313 GT-AG 0 1.000000099473604e-05 55 rna-XM_027338625.1 11132756 5 2975561 2975615 Dermatophagoides pteronyssinus 6956 GAG|GTTAGCTAAT...ATAATTATAATG/ATGATGATAATT...TCTAG|AAC 1 1 16.866
61608314 GT-AG 0 1.1114597600833257e-05 69 rna-XM_027338625.1 11132756 6 2974226 2974294 Dermatophagoides pteronyssinus 6956 ATG|GTAATTATCT...TTTTTTTTTGCA/CAAATAATTATA...TATAG|AAA 1 1 39.801
61608315 GT-AG 0 0.0035477492099139 70 rna-XM_027338625.1 11132756 7 2973707 2973776 Dermatophagoides pteronyssinus 6956 CAG|GTATGTATGC...ATGCCCTTATCG/TTAAATTTGATT...TTTAG|CAA 0 1 47.935
61608316 GT-AG 0 1.000000099473604e-05 95 rna-XM_027338625.1 11132756 8 2972532 2972626 Dermatophagoides pteronyssinus 6956 ATG|GTTCGTTTAG...TTATTATTATTT/ATTCTTTTCATT...AACAG|GAT 0 1 67.5
61608317 GT-AG 0 0.0676299019388639 64 rna-XM_027338625.1 11132756 9 2972114 2972177 Dermatophagoides pteronyssinus 6956 GAT|GTAAACTTTT...TACCTTTTAACT/TTTTAACTTAAT...TTCAG|GCT 0 1 73.913
61608318 GT-AG 0 0.001549730832728 75 rna-XM_027338625.1 11132756 10 2971709 2971783 Dermatophagoides pteronyssinus 6956 AAT|GTAAGTTTTT...CTAATCTTATTA/ACTAATCTTATT...AACAG|AGA 0 1 79.891
61608319 GT-AG 0 6.432522243665966e-05 67 rna-XM_027338625.1 11132756 11 2971504 2971570 Dermatophagoides pteronyssinus 6956 ACG|GTTTGTTAAT...CATTCATTAATA/ATTATTTTCATT...AACAG|GAT 0 1 82.391

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.923ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)